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Found 27 result(s)

SiB Colombia Portal de Datos

GBIF Colombia

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The Colombian Biodiversity Information Facility (SiB Colombia) is a national initiative established in early 2000 and coordinated by Instituto Humboldt to facilitate free and open access to biodiversity data. It comprises a network of more than 100 organizations (including universities, biological collections, research institutes, environmental authorities and NGOs among others) that work together to ensure that biodiversity data is available to support further research, education, policy making and incentive measures for the conservation and sustainable use of biodiversity. SiB Colombia’s mission is to facilitate the management of biodiversity data by bringing together users, publishers and data producers to support research, education and decision making related to knowledge, conservation and sustainable use of biodiversity and ecosystem services. SiB Colombia aims to consolidate the collaborative platform that facilitates the generation, use and democratization of knowledge on the biodiversity of Colombia. Thus, SiB Colombia contributes to a vision of a society that knows and values the biodiversity in which it is immersed, and uses such knowledge for its development.

VertNet

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VertNet is a NSF-funded collaborative project that makes biodiversity data free and available on the web. VertNet is a tool designed to help people discover, capture, and publish biodiversity data. It is also the core of a collaboration between hundreds of biocollections that contribute biodiversity data and work together to improve it. VertNet is an engine for training current and future professionals to use and build upon best practices in data quality, curation, research, and data publishing. Yet, VertNet is still the aggregate of all of the information that it mobilizes. To us, VertNet is all of these things and more.

EarthEnv

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The EarthEnv project is a collaborative project of biodiversity scientists and remote sensing experts to develop near-global standardized, 1km resolution layers for monitoring and modeling biodiversity, ecosystems, and climate. The work is supported by NCEAS, NASA, NSF, and Yale University.

Ningaloo Atlas

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The Ningaloo Atlas was created in response to the need for more comprehensive and accessible information on environmental and socio-economic data on the greater Ningaloo region. As such, the Ningaloo Atlas is a web portal to not only access and share information, but to celebrate and promote the biodiversity, heritage, value, and way of life of the greater Ningaloo region.

North American Breeding Bird Survey

NABBS

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The BBS is a cooperative effort between the U.S. Geological Survey's Patuxent Wildlife Research Center and Environment Canada's Canadian Wildlife Service to monitor the status and trends of North American bird populations. Following a rigorous protocol, BBS data are collected by thousands of dedicated participants along thousands of randomly established roadside routes throughout the continent. Professional BBS coordinators and data managers work closely with researchers and statisticians to compile and deliver these population data and population trend analyses on more than 400 bird species, for use by conservation managers, scientists, and the general public.

Open Tree of Life

Tree of Life - Evolution

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The tree of life links all biodiversity through a shared evolutionary history. This project will produce the first online, comprehensive first-draft tree of all 1.8 million named species, accessible to both the public and scientific communities. Assembly of the tree will incorporate previously-published results, with strong collaborations between computational and empirical biologists to develop, test and improve methods of data synthesis. This initial tree of life will not be static; instead, we will develop tools for scientists to update and revise the tree as new data come in. Early release of the tree and tools will motivate data sharing and facilitate ongoing synthesis of knowledge.

DWB BioCASe Data Publication pipeline and RDF service

Bavarian Natural History Collections - occurrence data

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Our research focuses mainly on the past and present bio- and geodiversity and the evolution of animals and plants. The Information Technology Center of the Staatliche Naturwissenschaftliche Sammlungen Bayerns is the institutional repository for scientific data of the SNSB. Its major tasks focus on the management of bio- and geodiversity data using different kinds of information technological structures. The facility guarantees a sustainable curation, storage, archiving and provision of such data.

RESPECT

Environmental changes in biodiverstiy hotspot ecosystems of South Ecuador: RESPonse and feedback effECTs

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RESPECT aims to unveil for the mountain rain forest in South Ecuador how major ecosystem functions, (i) ecosystem biomass production, and (ii) water fluxes, are affected by ongoing and future environmental changes through alterations in response and effect traits of relevant biota. The research question is addressed with two approaches: (i) A newest generation Land Surface Model (LSM) and (ii) a statistical response–effect framework (REF). By including (i) specific Plant Functional Types (PFTs) for the megadiverse biodiversity hotspot, (ii) introducing trait diversity, (iii) new modules for tree hydraulics and (iv) new modules of focal biological processes (seed dispersal and PFT establishment, herbivory) we will conduct a biodiversification of LSMs.

GRIN-CA Taxonomy

Plant Gene Resources of Canada: GRIN-CA Taxonomy

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GRIN-CA taxonomic data provide the structure and nomenclature for the accessions of the Canadian National Plant Germplasm System (NPGS). Many plants are included in GRIN-CA taxonomy, especially economic plants.

Experimental Lakes Area

IISD - ELA

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IISD Experimental Lakes Area is one of the world’s most influential freshwater research facilities. It features a collection of 58 small lakes and their watersheds in Northwestern Ontario, Canada, as well as a facility with accommodations and laboratories for up to 60 personnel.

Australian SuperSite Network Data Portal

SupeSites Data Portal

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<<<!!!<<< This repository is no longer available. It is part now of TERN Data Discovery Portal https://www.re3data.org/repository/r3d100012013 >>>!!!>>>

AIMS Data Repository

formerly: AIMS Data Centre

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The Australian Institute of Marine Science (AIMS) is a tropical marine research centre. The AIMS Data Repository preserves experimental and survey data, sensor data, research analyses and other types of data collected by projects conducted by the Australian Institute of Marine Science (AIMS). Contributors to the repository are primarily AIMS researchers from various science disciplines including ecology, biology, environmental sciences, microbiology, geosciences and oceanography, geochemistry, biodiversity conservation, evolutionary environmental studies, climate and oceanic change, fisheries, biochemistry and molecular biology, limnology and functions of inland waters, genetics and hereditary, observing network

Woods Hole Oceanographic Institution - Data & Repositories

WHOI

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WHOI is the world's leading non-profit oceanographic research organization. WHOI maintains unparalleled depth and breadth of expertise across a range of oceanographic research areas. Institution scientists and engineers work collaboratively within and across six research departments to advance knowledge of the global ocean and its fundamental importance to other planetary systems. At the same time, they also train future generations of ocean scientists and address problems that have a direct impact in efforts to understand and manage critical marine resources.

DIAS

Data Integration and Analysis System

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DIAS aims at collecting and storing earth observation data; analyzing such data in combination with socio-economic data, and converting data into information useful for crisis management with respect to global-scale environmental disasters, and other threats; and to make this information available within Japan and overseas.

TreeBASE

a database of phylogenetic knowledge

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TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in publications that are in preparation or in review can be submitted to TreeBASE but are only available to the authors, publication editors, or reviewers using a special access code.

The USGS Land Cover Institute

LCI

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The USGS currently houses the institute at the Center for Earth Resources Observation and Science (EROS) in Sioux Falls, South Dakota. The LCI will address land cover topics from local to global scales, and in both domestic and international settings. The USGS through the Land Cover Institute serves as a facilitator for land cover and land use science, applications, and production functions. The institute assists in the availability and technical support of land cover data sets through increasing public and scientific awareness of the importance of land cover science. LCI continues, after the reorganization of the World Data Centers in 2009, serving as the World Data Center (WDC) for land cover data for access to, or information about, land cover data of the world

Norwegian Marine Data Center

Norsk marint datasenter

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The Norwegian Marine Data Centre (NMD) at the Institute of Marine Research was established as a national data centre dedicated to the professional processing and long-term storage of marine environmental and fisheries data and production of data products. The Institute of Marine Research continuously collects large amounts of data from all Norwegian seas. Data are collected using vessels, observation buoys, manual measurements, gliders – amongst others. NMD maintains the largest collection of marine environmental and fisheries data in Norway.

Bolin Centre Database

Bolin Centre for Climate Research

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The main objective of the Bolin Centre Database is to ensure the preservation, interoperability and open access of climate research data for members of the Bolin Centre for Climate Research. The Bolin Centre Database also provides expert advice and guidance on data management. The Bolin Centre itself is a multi-disciplinary consortium in Sweden that conducts research and graduate education related to the Earth´s climate, in collaboration between Stockholm University, The Swedish Meteorological and Hydrological Institute (SMHI) and the KTH Royal Institute of Technology.

Open Research Data

ZALF. Open Research Data

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Attention! Data sets are not updated anymore. Please, visit the BonaRes Repositor​ium​ for new datasets. Open Research Data provides quality assessed data and their metadata such as context information on measurement objectives, equipment, methods, testing and investigation areas. The purpose of the repository is to secure quality, integrity and long-term availability of landscape and ecosystem research data as well as to enhance accessibility of free data from ZALF long-term monitoring campaigns, landscape laboratories (Agro-ScapeLabs), field trials and experiments. The Leibniz Centre for Agricultural Landscape Research (ZALF) explores ecosystems in agricultural landscapes and the development of ecologically and economically viable land use systems. ZALF combines scientific expertise from agricultural science, geosciences, biosciences and socio-economics.

Flanders Marine Institute

VLIZ

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The Flanders Marine Institute (VLIZ) is a centre for marine and coastal research. As a partner in various projects and networks it promotes and supports the international image of Flemish marine scientific research and international marine education. In its capacity as a coordination and information platform, the Flanders Marine Institute (VLIZ) supports some thousand marine scientists in Flanders by disseminating their knowledge to policymakers, educators, the general public and scientists.

GEOSS Portal

The Global Earth Observation System of Systems Portal

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The GEOSS Portal provides an entry point to access Earth Observation information and services. It will connect to a system of existing portals, addressing the GEO Societal Benefit Areas globally and provide national to regional perspective to achieve synergy and leverage.

Birdbase

A database of avian genes & genomes

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<<<!!!<<< This repository is no longer available. >>>!!!>>> The sequencing of several bird genomes and the anticipated sequencing of many more provided the impetus to develop a model organism database devoted to the taxonomic class: Aves. Birds provide model organisms important to the study of neurobiology, immunology, genetics, development, oncology, virology, cardiovascular biology, evolution and a variety of other life sciences. Many bird species are also important to agriculture, providing an enormous worldwide food source worldwide. Genomic approaches are proving invaluable to studying traits that affect meat yield, disease resistance, behavior, and bone development along with many other factors affecting productivity. In this context, BirdBase will serve both biomedical and agricultural researchers.

GigaDB

GigaScience Database

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GigaDB primarily serves as a repository to host data and tools associated with articles published by GigaScience Press; GigaScience and GigaByte (both are online, open-access journals). GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support a unit-of-work (article or study). GigaDB allows the integration of manuscript publication with supporting data and tools.

China National GeneBank DataBase

国家基因库生命大数据平台

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The China National GeneBank database (CNGBdb) is a unified platform for biological big data sharing and application services. CNGBdb has now integrated a large amount of internal and external biological data from resources such as CNGB, NCBI, and the EBI. There are several sub-databases in CNGBdb, including literature, variation, gene, genome, protein, sequence, organism, project, sample, experiment, run, and assembly. Based on underlying big data and cloud computing technologies, it provides various data services, including archive, analysis, knowledge search, and management authorization of biological data. CNGBdb adopts data structures and standards of international omics, health, and medicine, such as The International Nucleotide Sequence Database Collaboration (INSDC), The Global Alliance for Genomics and Health GA4GH (GA4GH), Global Genome Biodiversity Network (GGBN), American College of Medical Genetics and Genomics (ACMG), and constructs standardized data and structures with wide compatibility. All public data and services provided by CNGBdb are freely available to all users worldwide. CNGB Sequence Archive (CNSA) is the bionomics data repository of CNGBdb. CNGB Sequence Archive (CNSA) is a convenient and efficient archiving system of multi-omics data in life science, which provides archiving services for raw sequencing reads and further analyzed results. CNSA follows the international data standards for omics data, and supports online and batch submission of multiple data types such as Project, Sample, Experiment/Run, Assembly, Variation, Metabolism, Single cell, and Sequence. Moreover, CNSA has achieved the correlation of sample entities, sample information, and analyzed data on some projects. Its data submission service can be used as a supplement to the literature publishing process to support early data sharing.CNGB Sequence Archive (CNSA) is a convenient and efficient archiving system of multi-omics data in the life science of CNGBdb, which provides archiving services for raw sequencing reads and further analyzed results. CNSA follows the international data standards for omics data, and supports online and batch submission of multiple data types such as Project, Sample, Experiment/Run, Assembly, Variation, Metabolism, Single cell, Sequence. Its data submission service can be used as a supplement to the literature publishing process to support early data sharing.

Marine Information Management System (MIMS)

MIMS

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The South African Marine Information Management System (MIMS) is an Open Archival Information System (OAIS) repository that plays a multifaceted role in archiving, publishing, and preserving marine-related datasets. As an IODE-accredited Associate Data Unit (ADU), MIMS serves as a national node for the IODE of the IOC of UNESCO. It archives and publishes collections and subsets of marine-related datasets for the National Department of Forestry, Fisheries, and the Environment (DFFE) and its regional partners. As an IOC member organization, DFFE is committed to supporting the long-term preservation and archival of marine and coastal data for South Africa and its regional partners, promoting open access to data, and encouraging scientific collaboration. Tasked with the long-term preservation of South Africa's marine and coastal data, MIMS functions as an institutional data repository. It provides primary access to all data collected by the DFFE Oceans and Coastal Research Directorate and acts as a trusted broker of scientific marine data for a wide range of South African institutions. MIMS hosts the IODE AFROBIS Node, an OBIS Node that coordinates and collates data management activities within the sub-Saharan African region. As part of the OBIS Steering Group, MIMS represents sub-Saharan Africa on issues around biological (biodiversity) data standards. It also facilitates data and metadata publishing for the region through the GBIF and OBIS networks. Operating on the Findable, Accessible, Interoperable, and Reusable (FAIR) data principles, MIMS aligns its practices to maximize ocean data exchange and use while respecting the conditions stipulated by the Data Provider. By integrating various functions and commitments, MIMS stands as a vital component in the marine and coastal data landscape, fostering collaboration, standardization, and accessibility in alignment with international standards and regional needs.