Repository details
TreeBASE
Name of repository
TreeBASE
Additional name(s)
- a database of phylogenetic knowledge
Repository URL
Subject(s)
Description
TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in publications that are in preparation or in review can be submitted to TreeBASE but are only available to the authors, publication editors, or reviewers using a special access code.
Contact
- https://treebase.org/treebase-web/contact.html
- help@treebase.org
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
- RRID:nif-0000-03587
- RRID:SCR_005688
- FAIRsharing_doi:10.25504/FAIRsharing.zcn4w4
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- data provider
Institution name
Identifier(s)
- ROR:00x6h5n95
- RRID:SCR_005910
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Institution name
Additional name(s)
- NESCent
Identifier(s)
- ROR:001ykb961
- RRID:SCR_005911
Country
Type(s) of responsibility
- technical
Type of institution
non-profit
Start date of responsibility
2010
End date of responsibility
2016
Institution name
Additional name(s)
- NSF
Identifier(s)
- ROR:021nxhr62
- RRID:SCR_012938
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Institution name
Identifier(s)
- ROR:0566bfb96
Contact(s)
- contact@naturalis.nl
Country
Type(s) of responsibility
- technical
- general
Type of institution
non-profit
Start date of responsibility
2016
Institution name
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Database licenses (1)
Database License
Data access (2)
Type of access to data
open
Type of access to data
restricted
Data access restriction type(s)
- other
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- registration
- other
Persistent identifier system(s)
- PURL
Name of the repository software
- other
Versioning
yes
Data citation guideline
Enhanced Publication
yes
Quality management
yes
Application programming interfaces (3)
Metadata standards (2)
Remarks
Remarks
TreeBASE is covered by Thomson Reuters Data Citation Index. In previous years the database has been hosted by the Yale Peabody Museum, the San Diego Supercomputer Center, the University at Buffalo, Harvard University, Leiden University, and the University of California, Davis. Development of TreeBASE is hosted at SourceForge. All source code can be downloaded from the TreeBASE subversion repository at SourceForge under a BSD license.
There are no fees for upload, but there are limits to the data size. The interface starts to choke when alignment lengths exceed 200,000 or so.
Wikipedia: https://en.wikipedia.org/wiki/TreeBASE
TreeBASE wiki: https://github.com/TreeBASE
Entry date
2012-12-14
Last update
2024-03-04
Cite this re3data.org record:
re3data.org: TreeBASE; editing status 2024-03-04; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2024-05-03- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
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has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-05-03
