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Found 21 result(s)

EBRAINS

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EBRAINS offers one of the most comprehensive platforms for sharing brain research data ranging in type as well as spatial and temporal scale. We provide the guidance and tools needed to overcome the hurdles associated with sharing data. The EBRAINS data curation service ensures that your dataset will be shared with maximum impact, visibility, reusability, and longevity, https://ebrains.eu/services/data-knowledge/share-data. Find data - the user interface of the EBRAINS Knowledge Graph - allows you to easily find data of interest. EBRAINS hosts a wide range of data types and models from different species. All data are well described and can be accessed immediately for further analysis.

STRING

Known and Predicted Protein-Protein Interactions

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STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources: - Genomic Context - High-throughput Experiments - (Conserved) Coexpression - Previous Knowledge STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.

IMEx

The International Molecular Exchange Consortium

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The IMEx consortium is an international collaboration between a group of major public interaction data providers who have agreed to share curation effort and develop and work to a single set of curation rules when capturing data from both directly deposited interaction data or from publications in peer-reviewed journals, capture full details of an interaction in a “deep” curation model, perform a complete curation of all protein-protein interactions experimentally demonstrated within a publication, make these interaction available in a single search interface on a common website, provide the data in standards compliant download formats, make all IMEx records freely accessible under the Creative Commons Attribution License

International Classification of Diseases

ICD

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ICD serves as the international standard for diagnostic classification for all general epidemiological, many health management purposes and clinical use. The ICD's resources include the analysis of different population groups' general health situations, monitoring of the incidence and prevalence of diseases in relation to the characteristics of the individuals affected, reimbursement, resource allocation, quality, and guidelines. The records provide the basis for the compilation of national mortality and morbidity statistics, and enable the storage and retrieval of diagnostic information for clinical epidemiological and quality purposes.

The Universal Protein Resource

UniProt

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The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc).

neuGRID

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NeuGRID is a secure data archiving and HPC processing system. The neuGRID platform uses a robust infrastructure to provide researchers with a simple interface for analysing, searching, retrieving and disseminating their biomedical data. With hundreds of investigators across the globe and more than 10 million of downloadable attributes, neuGRID aims to become a widespread resource for brain analyses. NeuGRID platform guarantees reliability with a fault-tolerant network to prevent system failure.

enviPath

The enironmental contaminant biotransormation pathway resource

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enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.

SWISS-MODEL Repository

SMR

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The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL.

OLOS

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OLOS is a Swiss-based data management portal tailored for researchers and institutions. Powerful yet easy to use, OLOS works with most tools and formats across all scientific disciplines to help researchers safely manage, publish and preserve their data. The solution was developed as part of a larger project focusing on Data Life Cycle Management (dlcm.ch) that aims to develop various services for research data management. Thanks to its highly modular architecture, OLOS can be adapted both to small institutions that need a "turnkey" solution and to larger ones that can rely on OLOS to complement what they have already implemented. OLOS is compatible with all formats in use in the different scientific disciplines and is based on modern technology that interconnects with researchers' environments (such as Electronic Laboratory Notebooks or Laboratory Information Management Systems).

Yareta

The Research Data Repository of Geneva's Higher Education Institutions

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Yareta is a repository service built on digital solutions for archiving, preserving and sharing research data that enable researchers and institutions of any disciplines to share and showcase their research results. The solution was developed as part of a larger project focusing on Data Life Cycle Management (dlcm.ch) that aims to develop various services for research data management. Thanks to its highly modular architecture, Yareta can be adapted both to small institutions that need a "turnkey" solution and to larger ones that can rely on Yareta to complement what they have already implemented. Yareta is compatible with all formats in use in the different scientific disciplines and is based on modern technology that interconnects with researchers' environments (such as Electronic Laboratory Notebooks or Laboratory Information Management Systems).

UniProtKB/Swiss-Prot

UniProt Knowledgebase

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<<<!!!<<< See UniProt entry https://www.re3data.org/repository/r3d100011521 >>>!!!>>> UniProtKB/Swiss-Prot is the manually annotated and reviewed section of the UniProt Knowledgebase (UniProtKB). It is a high quality annotated and non-redundant protein sequence database, which brings together experimental results, computed features and scientific conclusions. Since 2002, it is maintained by the UniProt consortium and is accessible via the UniProt website.

arrayMap

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arrayMap is a repository of cancer genome profiling data. Original) from primary repositories (e.g. NCBI GEO, EBI ArrayExpress, TCGA) is re-processed and annotated for metadata. Unique visualization of the processed data allows critical evaluation of data quality and genome information. Structured metadata provides easy access to summary statistics, with a focus on copy number aberrations in cancer entities.

Liverpool COVID-19 Drug Interactions

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The COVID-19 pandemic has affected every country in the world. It is well documented that those most susceptible to the worst outcomes of COVID-19 are the immunocompromised and those with underlying comorbidities. Therefore, patients requiring treatment for COVID-19 will also be on additional medication, posing a risk for drug-drug interactions (DDIs). In order to address this, the Liverpool Drug Interactions website team developed this freely available drug interactions resource to provide information on the likelihood of interactions between the experimental agents used for the treatment of COVID-19 and commonly prescribed co-medications.

GermOnline

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GermOnline 4.0 is a cross-species database gateway focusing on high-throughput expression data relevant for germline development, the meiotic cell cycle and mitosis in healthy versus malignant cells. The portal provides access to the Saccharomyces Genomics Viewer (SGV) which facilitates online interpretation of complex data from experiments with high-density oligonucleotide tiling microarrays that cover the entire yeast genome.

STITCH

Search Tool for Interactions of Chemicals

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The Database explores the interactions of chemicals and proteins. It integrates information about interactions from metabolic pathways, crystal structures, binding experiments and drug-target relationships. Inferred information from phenotypic effects, text mining and chemical structure similarity is used to predict relations between chemicals. STITCH further allows exploring the network of chemical relations, also in the context of associated binding proteins.

ViralZone

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ViralZone is a SIB Swiss Institute of Bioinformatics web-resource for all viral genus and families, providing general molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives an easy access to UniProtKB/Swiss-Prot viral protein entries.

Sicas Medical Image Repository

SMIR

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The SICAS Medical Image Repository is a freely accessible repository containing medical research data including medical images, surface models, clinical data, genomics data and statistical shape models. The data can freely be organized and shared on SMIR and made publicly accessible with a DOI. Dedicated data sets are organized as collections of anatomical regions (e.g Cochlea). The data can be filtered using a modular search and accessed on the web or through the SMIR API.

SwissLipids

Swiss+Lipids

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SwissLipids is an expert curated resource that provides a framework for the integration of lipid and lipidomic data with biological knowledge and models.

FORS Data Service

FORS Data and Research Information Services for the Social Sciences

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FORS is the Swiss Centre of Expertise in the Social Sciences. FORS maintains a national digital archive for social science research data, implements large-scale national and international surveys, offers data and research information services to researchers and academic institutions, and conducts methodological and thematic research. FORS Data Service is FORS’ resource centre for research and teaching in the social sciences. It provides data management support and training, and it archives, disseminates and promotes quantitative and qualitative data. The Data Service maintains a comprehensive and up-to-date inventory of social science research projects in Switzerland, and makes available a wide range of datasets for secondary analysis. Databases at the FORS Data Service are: SWISSUbase and DeVisu (for variable level metadata for important surveys).

SWISSUbase

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SWISSUbase is a national cross-disciplinary solution for Swiss universities and other research organisations in need of local institutional data repositories for their researchers. SWISSUbase offers to the Swiss research institutions a tool for the curation, preservation, and dissemination of scientific research data and for the storage of information on ongoing and completed research projects in the country. The platform relies on international archiving standards and processes to ensure that data are preserved and accessible in the long-term. Datasets are curated by Data Service Units (DSU). DSU LaRS – Language Repository of Switzerland: https://www.lars.uzh.ch/en.html

ERIC/open

The Eawag Research Data Institutional Repository

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ERIC/open is the institutional repository where Eawag scientists publish their research data. Research data is organized in Packages which contain one or more Resources. Resources are usually files containing research data proper or ancillary information such as a README-file. A URL pointing to external information might also constitute a Resource.