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Found 73 result(s)

PlutoF

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An online data management workbench and computing service provider for biology and related disciplines.

SITES Data Portal

Swedish Infrastructure for Ecosystem Science

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The Swedish Infrastructure for Ecosystem Science (SITES) is a national infrastructure for terrestrial and limnological field research. SITES aims to promote high-quality research through long-term field measurements and field experiments, and by making data available. Quality-controlled monitoring data from SITES is freely available on the SITES Data Portal from all participating stations and thematic programs. New datasets are continuously being uploaded.

Rothamsted Long-term Experiments Electronic Archive

e-RA

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E-RA provides a permanent managed repository and knowledgebase for secure storage of metadata and data from Rothamsted's Long-term Experiments, the oldest, continuous agronomic experiments in the world. Together with the accompanying meteorological records, associated documentation and sample archive, it is a unique historical record of experiments that have been measured continuously since 1843. e-RA provides comprehensive descriptions of Rothamsted's long-term experiments including Broadbalk Wheat, Park Grass Hay, Hoosfield Barley, Rothamsted and Woburn Ley Arables, and Long-term Liming. e-RA maintains long-term routine data collections including crop yields, quality traits, agronomic management, soil chemistry, disease, and botanical diversity. The experiments are available as a research infrastructure to scientists and scientists are encouraged to deposit any new data generated with e-RA.

Canada's National Forest Inventory

Inventaire forestier national du Canada

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The National Forest Inventory (NFI) is a collaborative effort involving federal, provincial and territorial government agencies. They monitor a network of twenty thousand sampling points across Canada on an ongoing basis to provide information on the state of Canada's forests and a continuous record of forest change. They provide data and products to forest science researchers, forest policy decision-makers and interested stakeholders.

National Center for Forestry and Grassland Genetic Resources

国家林业和草原种质资源库

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The National Center for Forestry and Grassland Genetic Resources (Forestry and Grassland Repository) consists of a series of in situ and ex situ repositories and ex situ repositories, including 15 in situ repositories, 137 ex situ repositories and 3 facility repositories (attached), all of which are recognized by the Seedling Department of the State Forestry and Grassland Administration or the National Forestry Germplasm Resource Platform to collect and preserve forest, grass, flower, bamboo and rattan germplasm resources, and to establish a big data system through standardization, digitization. The purpose of the Forestry and Grassland Resource Bank is to strengthen the germplasm resources of forests, grasses, flowers, bamboos and rattan. The purpose of the Forestry and Grass Resource Bank is to strengthen the collection and preservation of forestry germplasm resources and open sharing, and to promote sustainable use; the objective is to use ultra-low temperature freezing, genomics, artificial intelligence and other high technology to carry out long-term preservation, accurate identification and in-depth exploration of germplasm resources, and to achieve safe preservation and efficient use of germplasm resources. The Forestry and Grassland Resource Bank undertakes the rendezvous of scientific and technological projects in the forestry germplasm resource category. By building an integrated sharing service platform for germplasm resource production, academia and research, it improves the innovation and exploitation capacity of forestry germplasm resources, supports major national needs in scientific research, ecological construction and economic development, promotes the docking of resources and needs, and facilitates the use of resources and the transformation of results. It realizes information and physical sharing, so that forest germplasm resources can be safely preserved and scientifically utilized.

Collaborative Research Centre Transregio 228 Database

TRR228DB

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The TRR228DB is the project-database of the Collaborative Research Centre 228 "Future Rural Africa: Future-making and social-ecological transformation" (CRC/Transregio 228, https://www.crc228.de) funded by the German Research Foundation (DFG, German Research Foundation – Project number 328966760). The project-database is a new implementation of the TR32DB and online since 2018. It handles all data including metadata, which are created by the involved project participants from several institutions (e.g. Universities of Cologne and Bonn) and research fields (e.g. anthropology, agroeconomics, ecology, ethnology, geography, politics and soil sciences). The data is resulting from several field campaigns, interviews, surveys, remote sensing, laboratory studies and modelling approaches. Furthermore, outcomes of the scientists such as publications, conference contributions, PhD reports and corresponding images are collected.

AmeriFlux

Measuring carbon, water and energy flux across the Americas

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AmeriFlux is a network of PI-managed sites measuring ecosystem CO2, water, and energy fluxes in North, Central and South America. It was established to connect research on field sites representing major climate and ecological biomes, including tundra, grasslands, savanna, crops, and conifer, deciduous, and tropical forests. As a grassroots, investigator-driven network, the AmeriFlux community has tailored instrumentation to suit each unique ecosystem. This “coalition of the willing” is diverse in its interests, use of technologies and collaborative approaches. As a result, the AmeriFlux Network continually pioneers new ground.

Vitis International Variety Catalogue

VIVC

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In 1984 the establishment of the Vitis International Variety Catalogue (VIVC) took place at the Institute for Grapevine Breeding Geilweilerhof. The concept of a database on grapevine genetic resources was supported by IBPGR (today called Bioversity) and the International Organisation of Vine and Wine (OIV). Today VIVC is an encyclopedic database with around 23000 cultivars, breeding lines and Vitis species, existing in grapevine repositories and/or described in bibliography. It is an information source for breeders, researchers, curators of germplasm repositories and interested wine enthusiasts. Besides cultivar specific passport data, SSR-marker data, comprehensive bibliography and photos are to be found.

datacommons@psu

Penn State Data Commons

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The datacommons@psu was developed in 2005 to provide a resource for data sharing, discovery, and archiving for the Penn State research and teaching community. Access to information is vital to the research, teaching, and outreach conducted at Penn State. The datacommons@psu serves as a data discovery tool, a data archive for research data created by PSU for projects funded by agencies like the National Science Foundation, as well as a portal to data, applications, and resources throughout the university. The datacommons@psu facilitates interdisciplinary cooperation and collaboration by connecting people and resources and by: Acquiring, storing, documenting, and providing discovery tools for Penn State based research data, final reports, instruments, models and applications. Highlighting existing resources developed or housed by Penn State. Supporting access to project/program partners via collaborative map or web services. Providing metadata development citation information, Digital Object Identifiers (DOIs) and links to related publications and project websites. Members of the Penn State research community and their affiliates can easily share and house their data through the datacommons@psu. The datacommons@psu will also develop metadata for your data and provide information to support your NSF, NIH, or other agency data management plan.

CSISA Data Repository

Cereal Systems Initiative for South Asia (CSISA) Research Data

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In keeping with the open data policies of the U.S. Agency for International Development (USAID) and Bill & Melinda Gates Foundation, the Cereal Systems Initiative for South Asia (CSISA) has launched the CSISA Data Repository to ensure public accessibility to key data sets, including crop cut data- directly observed, crop yield estimates, on-station and on-farm research trial data and socioeconomic surveys. CSISA is a science-driven and impact-oriented regional initiative for increasing the productivity of cereal-based cropping systems in Bangladesh, India and Nepal, thus improving food security and farmers’ livelihoods. CSISA generates data that is of value and interest to a diverse audience of researchers, policymakers and the public. CSISA’s data repository is hosted on Dataverse, an open source web application developed at Harvard University to share, preserve, cite, explore and analyze research data. CSISA’s repository contains rich datasets, including on-station trial data from 2009–17 about crop and resource management practices for sustainable future cereal-based cropping systems. Collection of this data occurred during the long-term, on-station research trials conducted at the Indian Council of Agricultural Research – Research Complex for the Eastern Region in Bihar, India. The data include information on agronomic management for the sustainable intensification of cropping systems, mechanization, diversification, futuristic approaches to sustainable intensification, long-term effects of conservation agriculture practices on soil health and the pest spectrum. Additional trial data in the repository includes nutrient omission plot technique trials from Bihar, eastern Uttar Pradesh and Odisha, India, covering 2012–15, which help determine the indigenous nutrient supplying ability of the soil. This data helps develop precision nutrient management approaches that would be most effective in different types of soils. CSISA’s most popular dataset thus far includes crop cut data on maize in Odisha, India and rice in Nepal. Crop cut datasets provide ground-truthed yield estimates, as well as valuable information on relevant agronomic and socioeconomic practices affecting production practices and yield. A variety of research data on wheat systems are also available from Bangladesh and India. Additional crop cut data will also be coming online soon. Cropping system-related data and socioeconomic data are in the repository, some of which are cross-listed with a Dataverse run by the International Food Policy Research Institute. The socioeconomic datasets contain baseline information that is crucial for technology targeting, as well as to assess the adoption and performance of CSISA-supported technologies under smallholder farmers’ constrained conditions, representing the ultimate litmus test of their potential for change at scale. Other highly interesting datasets include farm composition and productive trajectory information, based on a 20-year panel dataset, and numerous wheat crop cut and maize nutrient omission trial data from across Bangladesh.

Data INRAE

INRAE data repository

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INRAE is the world’s first organisation specialized on agricultural, food and environmental sciences. Data INRAE is offered by INRAE as part of its mission to open the results of its research. Data INRAE will share research data in relation with food, nutrition, agriculture and environment. It includes experimental, simulation and observation data, omic data, survey and text data. Only data produced by or in collaboration with INRAE will be hosted in the repository, but anyone can access the metadata and the open data.

CottonGen

Cotton Database Resources

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CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure. CottonGen consolidates and expands the data from CottonDB and the Cotton Marker Database, providing enhanced tools for easy querying, visualizing and downloading research data.

Cotton EST database

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<<<!!!<<< This repository is no longer available. >>>!!!>>> Database platform for cotton expressed sequence tag (EST)-related information, covering assembled contigs, function annotation, analysis of GO and KEGG, SNP, miRNA, SSR-related marker information.

Conservation Genome Resource Bank for Korean Wildlife

CGRB

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Genome resource samples of wild animals, particularly those of endangered mammalian and avian species, are very difficult to collect. In Korea, many of these animals such as tigers, leopards, bears, wolves, foxes, gorals, and river otters, are either already extinct, long before the Korean biologists had the opportunity to study them, or are near extinction. Therefore, proposal for a systematic collection and preservation of genetic samples of these precious animals was adopted by Korea Science & Engineering Foundation (KOSEF). As an outcome, Conservation Genome Resource Bank for Korean Wildlife (CGRB; www.cgrb.org) was established in 2002 at the College of Veterinary Medicine, Seoul National University as one of the Special Research Materials Bank supported by the Scientific and Research Infrastructure Building Program of KOSEF. CGRB operates in collaboration with Seoul Grand Park Zoo managed by Seoul Metropolitan Government, and has offices and laboratories at both Seoul National University and Seoul Grand Park, where duplicate samples are maintained, thereby assuring a long-term, safe preservation of the samples. Thus, CGRB is the first example of the collaborative scientific infrastructure program between university and zoo in Korea.

GnpIS

Genetic and Genomic Information System

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GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Research Institute for Agriculture, Food and Environment. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.

Virginia Tech Data Repository

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The purpose of the Virginia Tech Data Repository is to highlight, preserve, and provide access to research products (e.g. datasets) of the Virginia Tech community, and in doing so help to disseminate the intellectual output of the university in its land-grant mission. The Virginia Tech Data Repository and Virginia Tech serve the Commonwealth of Virginia, the nation, and the world’s community through the discovery and dissemination of new knowledge.

Critical Zone Observatories data

CZO data

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The NSF-supported Program serves the international scientific community through research, infrastructure, data, and models. We focus on how components of the Critical Zone interact, shape Earth's surface, and support life. ARCHIVED CONTENT: In December 2020, the CZO program was succeeded by the Critical Zone Collaborative Network (CZ Net) https://criticalzone.org/

South African Environmental Observation Network Data Portal

SAEON Data Portal

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The South African Environmental Observation Network (SAEON) Open Data Platform (ODP) is a metadata repository that facilitates the publication, discovery, dissemination, and preservation of earth observation and environmental data in South Africa. SAEON is a long-term environmental observation and research facility of the National Research Foundation (NRF).

OpenAgrar

OA

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OpenAgrar is an open access repository which publishes, stores, archives and distributes publications, publication references and research data. Its resources can be searched and used by everyone. It contains amongst others theses, reports, conference proceedings, journal articles, books, institutional documents, research datasets, videos and interviews.

GrainGenes

A Database for Triticeae and Avena

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GrainGenes is a digital platform that serves small grains research communities as their central data repository and as a facilitator for community activities.

TreeGenes

A forest tree genome database

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TreeGenes is a genomic, phenotypic, and environmental data resource for forest tree species. The TreeGenes database and Dendrome project provide custom informatics tools to manage the flood of information.The database contains several curated modules that support the storage of data and provide the foundation for web-based searches and visualization tools. GMOD GUI tools such as CMAP for genetic maps and GBrowse for genome and transcriptome assemblies are implemented here. A sample tracking system, known as the Forest Tree Genetic Stock Center, sits at the forefront of most large-scale projects. Barcode identifiers assigned to the trees during sample collection are maintained in the database to identify an individual through DNA extraction, resequencing, genotyping and phenotyping. DiversiTree, a user-friendly desktop-style interface, queries the TreeGenes database and is designed for bulk retrieval of resequencing data. CartograTree combines geo-referenced individuals with relevant ecological and trait databases in a user-friendly map-based interface. ---- The Conifer Genome Network (CGN) is a virtual nexus for researchers working in conifer genomics. The CGN web site is maintained by the Dendrome Project at the University of California, Davis.

JaLTER MetaCat Service

JaLTER Database Systems

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The vision of the JaLTER is to provide scientific knowledge which contributes to conservation, advancement and sustainability of environment, ecosystem services, productivity and biodiversity for a society by conducting long-term and interdisciplinary research in ecological science including human dimensions. The JaLTER is closely linked with the International Long-Term Ecological Research Network (ILTER Network).

Canadian Wildland Fire Information System

Système canadien d'information sur les feux de végétation

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The Large Fire Database (LFDB) is a compilation of forest fire data from all Canadian agencies, including provinces, territories, and Parks Canada. The data set includes only fires greater than 200 hectares in final size; these represent only a few percent of all fires but account for most of the area burned (usually more than 97%). Therefore, the LFDB can be used for spatial and temporal analyses of landscape-scale fire impacts. For information on smaller fires (up to 200 ha in final size), please contact individual fire agencies. Links to other agencies can be found through the Canadian Interagency Forest Fire Centre (CIFFC).

Biodiversity Exploratories Information System

BExIS

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BExIS is the online data repository and information system of the Biodiversity Exploratories Project (BE). The BE is a German network of biodiversity related working groups from areas such as vegetation and soil science, zoology and forestry. Up to three years after data acquisition, the data use is restricted to members of the BE. Thereafter, the data is usually public available (https://www.bexis.uni-jena.de/ddm/publicsearch/index).

Natural Heritage Information Centre

Centre d'information sur le patrimoine naturel

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The Ontario Natural Heritage Information Centre (NHIC) compiles, maintains and provides information on rare, threatened and endangered species and spaces in Ontario. This information is stored in a central repository composed of computerized databases, map files and an information library, which are accessible for conservation applications, land use development planning, park management, etc. Ministry of Natural Resources, Ontario.