Filter
Reset all

Subjects

Content Types

Countries

AID systems

API

Certificates

Data access

Data access restrictions

Database access

Database access restrictions

Database licenses

Data licenses

Data upload

Data upload restrictions

Enhanced publication

Institution responsibility type

Institution type

Keywords

Metadata standards

PID systems

Provider types

Quality management

Repository languages

Software

Repository types

Versioning

  • * at the end of a keyword allows wildcard searches
  • " quotes can be used for searching phrases
  • + represents an AND search (default)
  • | represents an OR search
  • - represents a NOT operation
  • ( and ) implies priority
  • ~N after a word specifies the desired edit distance (fuzziness)
  • ~N after a phrase specifies the desired slop amount
  • 1 (current)
Found 17 result(s)

FlyReactome

a curated knowledgebase of drosophila melanogaster pathways

Subject(s)
Content type(s)
Country
<<<!!!<<< This repository is no longer available. This record is out dated >>>!!!>>>- eir fields, maintained by the FlyReactome staff.

Ensembl Metazoa

e!EnsemblMetazoa

Subject(s)
Content type(s)
Country
Ensembl Metazoa is a genome-centric portal for metazoan species of scientific interest.

American Mineralogist Crystal Structure Database

AMCSD

Subject(s)
Content type(s)
Country
AMCSD is an interface to a crystal structure database that includes every structure published in the American Mineralogist, The Canadian Mineralogist, European Journal of Mineralogy and Physics and Chemistry of Minerals, as well as selected datasets from other journals. The database is maintained under the care of the Mineralogical Society of America and the Mineralogical Association of Canada, and financed by the National Science Foundation. You may search by a mineral of your choice, or choose a mineral from a complete list to help aid your research.

Ensembl Plants

e!EnsemblPlants

Subject(s)
Content type(s)
Country
EnsemblPlants is a genome-centric portal for plant species. Ensembl Plants is developed in coordination with other plant genomics and bioinformatics groups via the EBI's role in the transPLANT consortium.

iDog

Dog Genome SNP Database

Subject(s)
Content type(s)
Country
iDog, an integrated resource for domestic dog (Canis lupus familiaris) and wild canids, provides the worldwide dog research community a variety of data services. This includes Genes, Genomes, SNPs, Breed/Disease Traits, Gene Expressions, Single Cell, Dog-Human Homolog Diseases and Literatures. In addition, iDog provides Online tools for performing genomic data visualization and analyses.

GISAID

GISAID EpiFlu database

Subject(s)
Content type(s)
Country
The GISAID Initiative promotes the international sharing of all influenza virus sequences, related clinical and epidemiological data associated with human viruses, and geographical as well as species-specific data associated with avian and other animal viruses, to help researchers understand how the viruses evolve, spread and potentially become pandemics. *** GISAID does so by overcoming disincentives/hurdles or restrictions, which discourage or prevented sharing of influenza data prior to formal publication. *** The Initiative ensures that open access to data in GISAID is provided free-of-charge and to everyone, provided individuals identify themselves and agree to uphold the GISAID sharing mechanism governed through its Database Access Agreement. GISAID calls on all users to agree to the basic premise of upholding scientific etiquette, by acknowledging the originating laboratories providing the specimen and the submitting laboratories who generate the sequence data, ensuring fair exploitation of results derived from the data, and that all users agree that no restrictions shall be attached to data submitted to GISAID, to promote collaboration among researchers on the basis of open sharing of data and respect for all rights and interests.

EcoCyc Database

EcoCyc E. coli Database

Subject(s)
Content type(s)
Country
EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of the entire genome, and of transcriptional regulation, transporters, and metabolic pathways.

ArkeoGIS

ArkeoGIS

Subject(s)
Content type(s)
Country
ArkeoGIS is a unified scientific data publishing platform. It is a multilingual Geographic Information System (GIS), initially developed in order to mutualize archaeological and paleoenvironmental data of the Rhine Valley. Today, it allows the pooling of spatialized scientific data concerning the past, from prehistory to the present day. The databases come from the work of institutional researchers, doctoral students, master students, private companies and archaeological services. They are stored on the TGIR Huma-Num service grid and archived as part of the Huma-Num/CINES long-term archiving service. Because of their sensitive nature, which could lead to the looting of archaeological deposits, access to the tool is reserved to archaeological professionals, from research institutions or non-profit organizations. Each user can query online all or part of the available databases and export the results of his query to other tools.

German Federation for Biological Data

GFBio

Subject(s)
Content type(s)
Country
The project brings together national key players providing environmentally related biological data and services to develop the ‘German Federation for Biological Data' (GFBio). The overall goal is to provide a sustainable, service oriented, national data infrastructure facilitating data sharing and stimulating data intensive science in the fields of biological and environmental research.

Ensembl Bacteria

e!EnsemblBacteria

Subject(s)
Content type(s)
Country
This site provides access to complete, annotated genomes from bacteria and archaea (present in the European Nucleotide Archive) through the Ensembl graphical user interface (genome browser). Ensembl Bacteria contains genomes from annotated INSDC records that are loaded into Ensembl multi-species databases, using the INSDC annotation import pipeline.

Ensembl Protists

e!EnsemblProtists

Subject(s)
Content type(s)
Country
EnsemblProtists is a genome-centric portal for protists species.

HumanCyc

Encyclopedia of Human Genes and Metabolism

Subject(s)
Content type(s)
Country
HumanCyc provides an encyclopedic reference on human metabolic pathways. It provides a zoomable human metabolic map diagram, and it has been used to generate a steady-state quantitative model of human metabolism. 2016: Subscriptions are now required to access HumanCyc. For more information on obtaining a subscription, click here: http://www.phoenixbioinformatics.org/biocyc#product-biocyc-subscription

AHEAD

European Archive of Historical EArthquake Data

Subject(s)
Content type(s)
Country
AHEAD, the European Archive of Historical Earthquake Data 1000-1899, is a distributed archive aiming at preserving, inventorying and making available, to investigators and other users, data sources on the earthquake history of Europe, such as papers, reports, Macroseismic Data Points (MDPs), parametric catalogues, and so on.

CosmoSim

CosmoSim database

Subject(s)
Content type(s)
Country
The CosmoSim database provides results from cosmological simulations performed within different projects: the MultiDark and Bolshoi project, and the CLUES project. The CosmoSim webpage provides access to several cosmological simulations, with a separate database for each simulation. Simulations overview: https://www.cosmosim.org/cms/simulations/simulations-overview/ . CosmoSim is a contribution to the German Astrophysical Virtual Observatory.

Astrophysics Source Code Library

ASCL

Subject(s)
Content type(s)
Country
The Astrophysics Source Code Library (ASCL) is a free online registry for source codes of interest to astronomers and astrophysicists and lists codes that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001).

MEROPS

Subject(s)
Content type(s)
Country
The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.

Ensembl Genomes

e!EnsemblGenomes

Subject(s)
Content type(s)
Country
The Ensembl genome annotation system, developed jointly by the EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy. In each domain, we aim to bring the integrative power of Ensembl tools for comparative analysis, data mining and visualisation across genomes of scientific interest, working in collaboration with scientific communities to improve and deepen genome annotation and interpretation.