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Found 314 result(s)

Scholarly Database at Indiana University

SDB

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The Scholarly Database (SDB) at Indiana University aims to serve researchers and practitioners interested in the analysis, modeling, and visualization of large-scale scholarly datasets. The online interface provides access to six datasets: MEDLINE papers, registered Clinical Trials, U.S. Patent and Trademark Office patents (USPTO), National Science Foundation (NSF) funding, National Institutes of Health (NIH) funding, and National Endowment for the Humanities funding – over 26 million records in total.

Stanford Microarray Database

SMD

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>>>!!!<<< SMD has been retired. After approximately fifteen years of microarray-centric research service, the Stanford Microarray Database has been retired. We apologize for any inconvenience; please read below for possible resolutions to your queries. If you are looking for any raw data that was directly linked to SMD from a manuscript, please search one of the public repositories. NCBI Gene Expression Omnibus EBI ArrayExpress All published data were previously communicated to one (or both) of the public repositories. Alternatively, data for publications between 1997 and 2004 were likely migrated to the Princeton University MicroArray Database, and are accessible there. If you are looking for a manuscript supplement (i.e. from a domain other than smd.stanford.edu), perhaps try searching the Internet Archive: Wayback Machine https://archive.org/web/ . >>>!!!<<< The Stanford Microarray Database (SMD) is a DNA microarray research database that provides a large amount of data for public use.

Chesapeake Bay Environmental Observatory

CBEO

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The Chesapeake Bay Environmental Observatory (CBEO) is a prototype to demonstrate the utility of newly developed Cyberinfrastructure (CI) components for transforming environmental research, education, and management. The CBEO project uses a specific problem of water quality (hypoxia) as means of directly involving users and demonstrating the prototype’s utility. Data from the Test Bed are being brought into a CBEO Portal on a National Geoinformatics Grid developed by the NSF funded GEON. This is a cyberinfrastructure netwrok that allows users access to datasets as well as the tools with which to analyze the data. Currently, Test Bed data avaialble on the CBEO Portal includes Water Quality Model output and water quality monitorig data from the Chesapeake Bay Program's CIMS database. This data is also available as aggregated "data cubes". Avaialble tools include the Data Access System for Hydrology (DASH), Hydroseek and an online R-based interpolator.

ONSchallenge

ONS

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---<<< This repository is no longer available. This record is out-dated >>>--- The ONS challenge contains open solubility data, experiments with raw data from different scientists and institutions. It is part of the The Open Notebook Science wiki community, ideally suited for community-wide collaborative research projects involving mathematical modeling and computer simulation work, as it allows researchers to document model development in a step-by-step fashion, then link model prediction to experiments that test the model, and in turn, use feeback from experiments to evolve the model. By making our laboratory notebooks public, the evolutionary process of a model can be followed in its totality by the interested reader. Researchers from laboratories around the world can now follow the progress of our research day-to-day, borrow models at various stages of development, comment or advice on model developments, discuss experiments, ask questions, provide feedback, or otherwise contribute to the progress of science in any manner possible.

Collaborative Climate Community Data and Processing Grid

C3Grid

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>>>!!!<<< The repository is no longer available. >>>!!!<<< C3-Grid is an ALREADY FINISHED project within D-Grid, the initiative to promote a grid-based e-Science framework in Germany. The goal of C3-Grid is to support the workflow of Earth system researchers. A grid infrastructure will be implemented that allows efficient distributed data processing and inter-institutional data exchange. Aim of the effort was to develop an infrastructure for uniform access to heterogeneous data and distributed data processing. The work was structured in two projects funded by the Federal Ministry of Education and Research. The first project was part of the D-Grid initiative and explored the potential of grid technology for climate research and developed a prototype infrastructure. Details about the C3Grid architecture are described in “Earth System Modelling – Volume 6”. In the second phase "C3Grid - INAD: Towards an Infrastructure for General Access to Climate Data" this infrastructure was improved especially with respect to interoperability to Earth System Grid Federation (ESGF). Further the portfolio of available diagnostic workflows was expanded. These workflows can be re-used now in adjacent infrastructures MiKlip Evaluation Tool (http://www.fona-miklip.de/en/index.php) and as Web Processes within the Birdhouse Framework (http://bird-house.github.io/). The Birdhouse Framework is now funded as part of the European Copernicus Climate Change Service (https://climate.copernicus.eu/) managed by ECMWF and will be extended to provide scalable processing services for ESGF hosted data at DKRZ as well as IPSL and BADC.

Open Tree of Life

Tree of Life - Evolution

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The tree of life links all biodiversity through a shared evolutionary history. This project will produce the first online, comprehensive first-draft tree of all 1.8 million named species, accessible to both the public and scientific communities. Assembly of the tree will incorporate previously-published results, with strong collaborations between computational and empirical biologists to develop, test and improve methods of data synthesis. This initial tree of life will not be static; instead, we will develop tools for scientists to update and revise the tree as new data come in. Early release of the tree and tools will motivate data sharing and facilitate ongoing synthesis of knowledge.

Digibug: Repositorio Institucional de la Universidad de Granada

University of Granada Institutional Repository

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DIGIBUG aims to collect, compile and organise the scientific, teaching and institutional digital documents produced by the University of Granada to support research, teaching and learning.

Unisa Institutional Repository

UnisaIR

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An open digital archive of scholarly, intellectual and research outputs of the University of South Africa. The UnisaIR contains and preserves theses and dissertations, research articles, conference papers, rare and special materials and many other digital assets. With special collections from the Documentation Center for African Studies including manuscripts, photos, political posters and other archival materials about the history of South Africa.

SilkPathDB

Silkworm Pathogen Database

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Silkworm Pathogen Database (SilkPathDB) is a comprehensive resource for studying on pathogens of silkworm, including microsporidia, fungi, bacteria and virus. SilkPathDB provides access to not only genomic data including functional annotation of genes and gene products, but also extensive biological information for gene expression data and corresponding researches. SilkPathDB will be help with researches on pathogens of silkworm as well as other Lepidoptera insects.

Grand Challenge Data Collection

Carnegie Mellon University Multi-Modal Activity Database

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The CMU Multi-Modal Activity Database (CMU-MMAC) database contains multimodal measures of the human activity of subjects performing the tasks involved in cooking and food preparation. The CMU-MMAC database was collected in Carnegie Mellon's Motion Capture Lab. A kitchen was built and to date twenty-five subjects have been recorded cooking five different recipes: brownies, pizza, sandwich, salad, and scrambled eggs.

The USH1C mutations database

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>>> !!! the repository is offline !!! The current successor is https://www.lovd.nl/USH1C. <<< The database contains all the variants published as pathogenic mutations in the international literature up to November 2007. In addition, unpublished Usher mutations and non-pathogenic variants from the laboratory of Montpellier have been included.

Surrey Research Insight

SRI

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Surrey Research Insight (SRI) is an open access resource that hosts, preserves and disseminates the full text of scholarly papers produced by members of the University of Surrey. Its main purpose is to help Surrey authors make their research more widely known; their ideas and findings readily accessible; and their papers more frequently read and cited. Surrey Research Insight (formerly Surrey Scholarship Online) was developed in line with the Open Access Initiative, promoting free access to scholarship for the benefit of authors and scholars. It is one of many open access repositories around the world that operate on agreed standards to ensure wide and timely dissemination of research.

RAMEDIS

Rare Metabolic Diseases Database

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The RAMEDIS system is a platform independent, web-based information system for rare metabolic diseases based on filed case reports. It was developed in close cooperation with clinical partners to allow them to collect information on rare metabolic diseases with extensive details, e.g. about occurring symptoms, laboratory findings, therapy and molecular data.

Seamount Catalog

SC

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The Seamount Catalog is a digital archive for bathymetric seamount maps from all the oceans that can be viewed and downloaded in various formats. This catalog contains morphological data, sample information, related grid and multibeam data files, as well as user-contributed files that all can be downloaded.

Open Government Data Portal of Tamil Nadu

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Open Government Data Portal of Tamil Nadu is a platform (designed by the National Informatics Centre), for Open Data initiative of the Government of Tamil Nadu. The portal is intended to publish datasets collected by the Tamil Nadu Government for public uses in different perspective. It has been created under Software as A Service (SaaS) model of Open Government Data (OGD) and publishes dataset in open formats like CSV, XLS, ODS/OTS, XML, RDF, KML, GML, etc. This data portal has following modules, namely (a) Data Management System (DMS) for contributing data catalogs by various state government agencies for making those available on the front end website after a due approval process through a defined workflow; (b) Content Management System (CMS) for managing and updating various functionalities and content types; (c) Visitor Relationship Management (VRM) for collating and disseminating viewer feedback on various data catalogs; and (d) Communities module for community users to interact and share their views and common interests with others. It includes different types of datasets generated both in geospatial and non-spatial data classified as shareable data and non-shareable data. Geospatial data consists primarily of satellite data, maps, etc.; and non-spatial data derived from national accounts statistics, price index, census and surveys produced by a statistical mechanism. It follows the principle of data sharing and accessibility via Openness, Flexibility, Transparency, Quality, Security and Machine-readable.

IndiaVotes

India Votes

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India Votes is India's largest public elections resource. It covers all Lok Sabha elections since 1952 and all State elections since 1977. IndiaVotes already has data on over 200 national as well as state elections and will be enriched with inputs from users. Even though election data is available online, it is not easily searchable or cannot be consumed in structured formats necessary for analysis. IndiaVotes aims to become the open-source equivalent and Wikipedia of election information in India.

Health Atlas

Leipzig Health Atlas

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The Health Atlas is an alliance of medical ontologists, medical systems biologists and clinical trials groups to design and implement a multi-functional and quality-assured atlas. It provides models, data and metadata on specific use cases from medical research projects from the partner institutions.

ScholarWorks@UMassAmherst

ScholarWorks

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ScholarWorks offers long-term storage and public access to the data and datasets produced by labs and researchers at UMass Amherst.

Université de Montréal – Dataverse

Dataverse UdeM

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The Libraries offer members of the Université de Montréal community the opportunity to publish their research data in a Dataverse repository space

HepSim

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HepSim is a public repository with Monte Carlo simulations for particle-collision experiments. It contains predictions from leading-order (LO) parton shower models, next-to-leading order (NLO) and NLO with matched parton showers. It also includes Monte Carlo events after fast ("parametric") and full (Geant4) detector simulations and event reconstruction.

East China Normal University Social Data Sharing Platform

华东师范大学人文社科大数据平台

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This platform aims to realize data storage, data management, data analysis, data sharing and data citation traceability of various data sets in the field of Humanities and Social Sciences of East China Normal University.

The Cell Vision

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TheCellVision.org is a freely available and web-accessible image visualization and data browsing tool that serves as a central repository for fluorescence microscopy images and associated quantitative data produced by high-content screening experiments. Currently, TheCellVision.org hosts images and associated analysis results from two published high- content screening (HCS) projects focused on the budding yeast Saccharomyces cerevisiae. TheCellVision.org allows users to access, visualize and explore fluorescence microscopy images, and to search, compare, and extract data related to subcellular compartment morphology, protein abundance, and localization. Each dataset can be queried independently or as part of a search across multiple datasets using the advanced search option. The website also hosts computational tools associated with the available datasets, which can be applied to other projects and cell systems, a feature we demonstrate using published images of mammalian cells. Providing access to HCS data through websites such as TheCellVision.org enables new discovery and independent re-analyses of imaging data."

Brain Image Library

BIL

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Brain Image Library (BIL) is an NIH-funded public resource serving the neuroscience community by providing a persistent centralized repository for brain microscopy data. Data scope of the BIL archive includes whole brain microscopy image datasets and their accompanying secondary data such as neuron morphologies, targeted microscope-enabled experiments including connectivity between cells and spatial transcriptomics, and other historical collections of value to the community. The BIL Analysis Ecosystem provides an integrated computational and visualization system to explore, visualize, and access BIL data without having to download it.

Smithsonian National Museum of Natural History

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Museum explorers travel to ocean depths, the peaks of the Andes, Africa's Rift Valley, the rainforests of South America, and the deserts of Central Asia. Perhaps even to a field site or research institution in your own state, territory or country. In each area, researchers collect specimens: fossils, minerals, and rocks, plants and animals, tools and artworks. Collections care professionals have meticulously preserved, labeled, cataloged, and organized items of this kind for more than 150 years. Taken together, the NMNH collections form the largest, most comprehensive natural history collection in the world. By comparing items gathered in different eras and regions, scientists learn how our world has varied across time and space.

KU Leuven RDR

KU Leuven Research Data Repository

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KU Leuven RDR (pronounced "RaDaR") is KU Leuven's Research Data Repository, built on Dataverse.org - open source repository software built by Harvard University. RDR gives KU Leuven researchers a one-stop platform to upload, describe, and share their research data, conveniently and with support from university staff.