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Found 35 result(s)

HUGO Gene Nomenclature Committee

HGNC

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The HUGO Gene Nomenclature Committee (HGNC) assigned unique gene symbols and names to over 35,000 human loci, of which around 19,000 are protein coding. This curated online repository of HGNC-approved gene nomenclature and associated resources includes links to genomic, proteomic and phenotypic information, as well as dedicated gene family pages.

Open Research Exeter

ORE

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Open Research Exeter (ORE) is the University of Exeter's repository for all types of research, including research papers, research data and theses. Research in ORE can be viewed and downloaded freely by anyone, anywhere: researchers, students, industry, business and the wider public. ORE's content includes journal articles, conference papers, working papers, reports, book chapters, videos, audio, images, multimedia research project outputs, raw data and analysed data. ORE's content is securely stored, managed and preserved to ensure free, permanent access.

International Mouse Phenotyping Consortium

IMPC

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The IMPC is a confederation of international mouse phenotyping projects working towards the agreed goals of the consortium: To undertake the phenotyping of 20,000 mouse mutants over a ten year period, providing the first functional annotation of a mammalian genome. Maintain and expand a world-wide consortium of institutions with capacity and expertise to produce germ line transmission of targeted knockout mutations in embryonic stem cells for 20,000 known and predicted mouse genes. Test each mutant mouse line through a broad based primary phenotyping pipeline in all the major adult organ systems and most areas of major human disease. Through this activity and employing data annotation tools, systematically aim to discover and ascribe biological function to each gene, driving new ideas and underpinning future research into biological systems; Maintain and expand collaborative “networks” with specialist phenotyping consortia or laboratories, providing standardized secondary level phenotyping that enriches the primary dataset, and end-user, project specific tertiary level phenotyping that adds value to the mammalian gene functional annotation and fosters hypothesis driven research; and Provide a centralized data centre and portal for free, unrestricted access to primary and secondary data by the scientific community, promoting sharing of data, genotype-phenotype annotation, standard operating protocols, and the development of open source data analysis tools. Members of the IMPC may include research centers, funding organizations and corporations.

EDINA

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EDINA delivers online services and tools to benefit students, teachers and researchers in UK Higher and Further Education and beyond.

Environmental Information Data Centre

EIDC

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The Environmental Information Data Centre (EIDC) is part of the Natural Environment Research Council's (NERC) Environmental Data Service and is hosted by the UK Centre for Ecology & Hydrology (UKCEH). We manage nationally-important datasets concerned with the terrestrial and freshwater sciences.

University of Manchester figshare

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The University selected figshare as a general purpose research data repository to enable researchers to share research data, facilitate open research practices and meet the evolving requirements of research funders and academic publishers. This is a public-facing platform for researchers to share their data and build, over time, a comprehensive representation of the research done at the University across all faculties and disciplines.

VectorBase

Bioinformatics Resource for Invertebrate Vectors of Human Pathogens

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VectorBase provides data on arthropod vectors of human pathogens. Sequence data, gene expression data, images, population data, and insecticide resistance data for arthropod vectors are available for download. VectorBase also offers genome browser, gene expression and microarray repository, and BLAST searches for all VectorBase genomes. VectorBase Genomes include Aedes aegypti, Anopheles gambiae, Culex quinquefasciatus, Ixodes scapularis, Pediculus humanus, Rhodnius prolixus. VectorBase is one the Bioinformatics Resource Centers (BRC) projects which is funded by National Institute of Allergy and Infectious Diseases (NAID).

The Cambridge Structural Database

CSD

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Established in 1965, the CSD is the world’s repository for small-molecule organic and metal-organic crystal structures. Containing the results of over one million x-ray and neutron diffraction analyses this unique database of accurate 3D structures has become an essential resource to scientists around the world. The CSD records bibliographic, chemical and crystallographic information for:organic molecules, metal-organic compounds whose 3D structures have been determined using X-ray diffraction, neutron diffraction. The CSD records results of: single crystal studies, powder diffraction studies which yield 3D atomic coordinate data for at least all non-H atoms. In some cases the CCDC is unable to obtain coordinates, and incomplete entries are archived to the CSD. The CSD includes crystal structure data arising from: publications in the open literature and Private Communications to the CSD (via direct data deposition). The CSD contains directly deposited data that are not available anywhere else, known as CSD Communications.

Edinburgh DataShare

DataShare

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Edinburgh DataShare is a digital repository of research data produced at the University of Edinburgh, hosted by the Research Data Service in Information Services. Edinburgh University researchers who have produced research data associated with an existing or forthcoming publication, or which has potential use for other researchers, are invited to upload their dataset for sharing and safekeeping. A persistent identifier and suggested citation will be provided.

Canadian Open Neuroscience Platform Portal

CONP

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The CONP portal is a web interface for the Canadian Open Neuroscience Platform (CONP) to facilitate open science in the neuroscience community. CONP simplifies global researcher access and sharing of datasets and tools. The portal internalizes the cycle of a typical research project: starting with data acquisition, followed by processing using already existing/published tools, and ultimately publication of the obtained results including a link to the original dataset. From more information on CONP, please visit https://conp.ca

GeoCommons Archive

gc

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GeoCommons is the public community of GeoIQ users who are building an open repository of data and maps for the world. The GeoIQ platform includes a large number of features that empower you to easily access, visualize and analyze your data. The GeoIQ platform powers the growing GeoCommons community of over 25,000 members actively creating and sharing hundreds of thousands of datasets and maps across the world. With GeoCommons, anyone can contribute and share open data, easily build shareable maps and collaborate with others.

St Andrews Research portal - Research Data

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The St Andrews research portal features the research activities within the University of St Andrews.

The CEDA Archive

British Atmospheric Data Centre (formerly)

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The Natural Environment Research Council's Data Repository for Atmospheric Science and Earth Observation. The Centre for Environmental Data Analysis (CEDA) serves the environmental science community through three data centres, data analysis environments, and participation in a host of relevant research projects. We aim to support environmental science, further environmental data archival practices, and develop and deploy new technologies to enhance access to data. Additionally we provide services to aid large scale data analysis.

Worldwide Protein Data Bank

wwPDB

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The Protein Data Bank (PDB) is an archive of experimentally determined three-dimensional structures of biological macromolecules that serves a global community of researchers, educators, and students. The data contained in the archive include atomic coordinates, crystallographic structure factors and NMR experimental data. Aside from coordinates, each deposition also includes the names of molecules, primary and secondary structure information, sequence database references, where appropriate, and ligand and biological assembly information, details about data collection and structure solution, and bibliographic citations. The Worldwide Protein Data Bank (wwPDB) consists of organizations that act as deposition, data processing and distribution centers for PDB data. Members are: RCSB PDB (USA), PDBe (Europe) and PDBj (Japan), and BMRB (USA). The wwPDB's mission is to maintain a single PDB archive of macromolecular structural data that is freely and publicly available to the global community.

SeaDataNet

Pan-European Infrastructure for ocean & marine data management

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SeaDataNet is a standardized system for managing the large and diverse data sets collected by the oceanographic fleets and the automatic observation systems. The SeaDataNet infrastructure network and enhance the currently existing infrastructures, which are the national oceanographic data centres of 35 countries, active in data collection. The networking of these professional data centres, in a unique virtual data management system provide integrated data sets of standardized quality on-line. As a research infrastructure, SeaDataNet contributes to build research excellence in Europe.

Research Data Leeds Repository

RDL Repository

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Research Data Leeds is the institutional research data repository for the University of Leeds. The service aims to facilitate data discovery and data sharing. The repository houses data generated by researchers at the University of Leeds.

IRIS

Instruments and data for research in language studies

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IRIS is a free and public collection of instruments, materials, stimuli, data, and data coding and analysis tools used for research into languages, including first, second-, and beyond, and signed language learning, multilingualism, language education, language use, and language processing. Materials are freely accessible and searchable, easy to upload (for contributions) and download (for use). For materials or data to be held on IRIS, it must have been used for an accepted peer-reviewed journal article, book chapter, conference proceeding or an approved PhD thesis. Materials and data are given a DOI and reference at the point of submission. By default, uploaders assigned a https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode.en

eData: the STFC Research Data Repository

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eData is an institutional repository where STFC staff can deposit data and software that underpin journal articles and other published research.

Human Intermediate Filament Database

HIFD

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The Intermediate Filament Database will function as a continuously updated review of the intermediate filament field and it is hoped that users will contribute to the development and expansion of the database on a regular basis. Contributions may include novel variants, new patients with previously discovered sequence and allelic variants. Suggestions on ways to improve the database are also welcome.

FAIRDOMHub

The SEEK datafiles

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The FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. FAIRDOM (Web Site) will establish a support and service network for European Systems Biology. It will serve projects in standardizing, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable. FAIRDOM is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP and European Research Infrastructure ISBE.

KORDS

King's College London Open Research Data System

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KORDS is a research data repository service providing long term storage and public access for datasets that support published research and/or have long term value.

Hydra

Hull's digital repository

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<<<!!!<<<We are moving content from our Hydra repository (hydra.hull.ac.uk) to new repositories.>>>!!!>>> Hydra is a repository for digital materials at the University of Hull. It can hold and manage any type of digital material, and is being developed in response to the growth in the amount of digital material that is generated through the research, education and administrative activities within the University. Hydra contains different collections of datasets from University of Hull research projects as: ARCdoc, domesday dataset, History of Marine animal Populations (HMAP) and others.

ChemSpider

Search and share chemistry

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ChemSpider is a free chemical structure database providing fast access to over 58 million structures, properties and associated information. By integrating and linking compounds from more than 400 data sources, ChemSpider enables researchers to discover the most comprehensive view of freely available chemical data from a single online search. It is owned by the Royal Society of Chemistry. ChemSpider builds on the collected sources by adding additional properties, related information and links back to original data sources. ChemSpider offers text and structure searching to find compounds of interest and provides unique services to improve this data by curation and annotation and to integrate it with users’ applications.

GenBank

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GenBank® is a comprehensive database that contains publicly available nucleotide sequences for almost 260 000 formally described species. These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP.

LEDAS

LEicester Database and Archive Service

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The Leicester Database and Archive Service (LEDAS) is an easy to use on-line astronomical database and archive access service, dealing mainly with data from high energy astrophysics missions, but also providing full database functionality for over 200 astronomical catalogues from ground-based observations and space missions. The LEDAS also allows access to images, spectra and light curves in graphics, HDS and FITS formats, as well as access to raw and processed event data. LEDAS provides the primary means of access for the UK astronomical community to the ROSAT Public Data Archive, the ASCA Public Data Archive and the Ginga Products Archive by its Archive Network Interface ARNIE.