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Found 244 result(s)

GeneWeaver.org

The Ontological Discovery Environment

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GeneWeaver combines cross-species data and gene entity integration, scalable hierarchical analysis of user data with a community-built and curated data archive of gene sets and gene networks, and tools for data driven comparison of user-defined biological, behavioral and disease concepts. Gene Weaver allows users to integrate gene sets across species, tissue and experimental platform. It differs from conventional gene set over-representation analysis tools in that it allows users to evaluate intersections among all combinations of a collection of gene sets, including, but not limited to annotations to controlled vocabularies. There are numerous applications of this approach. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users.

GnpIS

Genetic and Genomic Information System

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GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Research Institute for Agriculture, Food and Environment. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.

Digital Rocks Portal

DRP

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Digital Rocks is a data portal for fast storage and retrieval of images of varied porous micro-structures. It has the purpose of enhancing research resources for modeling/prediction of porous material properties in the fields of Petroleum, Civil and Environmental Engineering as well as Geology. This platform allows managing and preserving available images of porous materials and experiments performed on them, and any accompanying measurements (porosity, capillary pressure, permeability, electrical, NMR and elastic properties, etc.) required for both validation on modeling approaches and the upscaling and building of larger (hydro)geological models. Starting September 2021 we charge fees for publishing larger projects; projects < 2GB remain free: see user agreement https://www.digitalrocksportal.org/user-agreement/

Pôle National de Données de Biodiversité

National Biodiversity Data Center

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In 2018, the Ministry of Higher Education, Research and Innovation has included in its roadmap the creation of a new infrastructure called the National Biodiversity Data Centre (PNDB). The PNDB's missions are part of a FAIR (Easy to Find, Accessible, Interoperable, Reusable) approach, and consist in - providing access to datasets and metadata, associated services and products derived from the analyses - promoting scientific leadership to identify gaps and foster the emergence of community-driven systems of users and producers - facilitate the sharing of practices with other research communities, encourage the sharing of data and their reuse, and be part of the reflection on the future Earth System infrastructure. - promote coherence with national, European and international efforts concerning access to and use of biodiversity research data and the promotion of products and services. The PNDB is supported by the Muséum national d'Histoire naturelle, more specifically by the UMS 2006 PatriNat, a MNHN CNRS and AFB unit. The project is closely linked with the FRB and several of its founding institutions (AFB, BRGM, CIRAD, CNRS, Ifremer, INERIS, INRA, IRD, IRSTEA, MNHN, Univ. Montpellier).

BAOBAB

Base Afrique de l'Ouest Beyond AMMA Base

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The projects include airborne, ground-based and ocean measurements, social science surveys, satellite data use, modelling studies and value-added product development. Therefore, the BAOBAB data portal enables to access a great amount and a large variety of data: - 250 local observation datasets, that have been collected by operational networks since 1850, long term monitoring research networks and intensive scientific campaigns; - 1350 outputs of a socio-economics questionnaire; - 60 operational satellite products and several research products; - 10 output sets of meteorological and ocean operational models and 15 of research simulations. Data documentation complies with metadata international standards, and data are delivered into standard formats. The data request interface takes full advantage of the database relational structure and enables users to elaborate multicriteria requests (period, area, property…).

European Union Open Data Portal

EU Open Data Portal

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The European Union Open Data Portal is the single point of access to a growing range of data from the institutions and other bodies of the European Union (EU). Data are free for you to use and reuse for commercial or non-commercial purposes. By providing easy and free access to data, the portal aims to promote their innovative use and unleash their economic potential. It also aims to help foster the transparency and the accountability of the institutions and other bodies of the EU. The EU Open Data Portal is managed by the Publications Office of the European Union. Implementation of the EU's open data policy is the responsibility of the Directorate-General for Communications Networks, Content and Technology of the European Commission.

System for Earth Sample Registration

SESAR

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SESAR, the System for Earth Sample Registration, is a global registry for specimens (rocks, sediments, minerals, fossils, fluids, gas) and related sampling features from our natural environment. SESAR's objective is to overcome the problem of ambiguous sample naming in the Earth Sciences. SESAR maintains a database of sample records that are contributed by its users. Each sample that is registered with SESAR is assigned an International Geo Sample Number IGSN to ensure its global unique identification.

Neuroscience Information Framework

NIF

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The Neuroscience Information Framework is a dynamic index of data, materials, and tools. Please note, we do not accept direct data deposits, but if you wish to make your data repository or database available through our search, please contact us. An initiative of the NIH Blueprint for Neuroscience Research, NIF advances neuroscience research by enabling discovery and access to public research data and tools worldwide through an open source, networked environment.

Pennsieve Discover

formerly: Blackfynn Discover

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The Pennsieve platform is a cloud-based scientific data management platform focused on integrating complex datasets, fostering collaboration and publishing scientific data according to all FAIR principles of data sharing. The platform is developed to enable individual labs, consortiums, or inter-institutional projects to manage, share and curate data in a secure cloud-based environment and to integrate complex metadata associated with scientific files into a high-quality interconnected data ecosystem. The platform is used as the backend for a number of public repositories including the NIH SPARC Portal and Pennsieve Discover repositories. It supports flexible metadata schemas and a large number of scientific file-formats and modalities.

WDC Sunspot Index and Long-term Solar Observations

SILSO

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SILSO is the World Data Center for the production, preservation and dissemination of the international sunspot number.

Geoscience Data Exchange

NCAR UCAR Geoscience Data Exchange

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The Geoscience Data Exchange (GDEX) mission is to provide public access to data and other digital research assets related to the Earth and its atmosphere, oceans, and space environment. GDEX fulfills federal and scientific publication requirements for open data access by: Providing long-term curation and stewardship of research assets; Enabling scientific transparency and traceability of research findings in digital formats; Complementing existing NCAR community data management and archiving capabilities; Facilitating openness and accessibility for the public to leverage the research assets and thereby benefit from NCAR's historical and ongoing scientific research. This mission intentionally supports and aligns with those of NCAR and its sponsor, the National Science Foundation (NSF).

KBase

KBase: The U.S. Department of Energy Systems Biology Knowledgebase

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The Department of Energy Systems Biology Knowledgebase (KBase) is a software and data platform designed to meet the grand challenge of systems biology: predicting and designing biological function. KBase integrates data and tools in a unified graphical interface so users do not need to access them from numerous sources or learn multiple systems in order to create and run sophisticated systems biology workflows. Users can perform large-scale analyses and combine multiple lines of evidence to model plant and microbial physiology and community dynamics. KBase is the first large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share and publish their workflows and conclusions. KBase aims to provide a knowledgebase: an integrated environment where knowledge and insights are created and multiplied.

data.eaufrance.fr

Répertoire des données publiques sur l'eau

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data.eaufrance.fr is an information system on water (EIS); it is registered in the National Plan for Water Data (NELS) and will be integrated into the data dissemination web pattern. It also complies with the European Directive 2003/98 / EC of November 2003 on the reuse of public sector information. data.eaufrance.fr is a public data distribution platform open for reuse in the terms and conditions of the Licence Open / Open License. Opendata SIE is coordinated by the National Office for Water and Aquatic Environments (Onema); it was developed by the BRGM and the International Office for Water (IOW).

Oak Ridge National Laboratory Distributed Active Archive Center for Biogeochemical Dynamics

ORNL DAAC

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The Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC) for biogeochemical dynamics is one of the National Aeronautics and Space Administration (NASA) Earth Observing System Data and Information System (EOSDIS) data centers managed by the Earth Science Data and Information System (ESDIS) Project. The ORNL DAAC archives data produced by NASA's Terrestrial Ecology Program. The DAAC provides data and information relevant to biogeochemical dynamics, ecological data, and environmental processes, critical for understanding the dynamics relating to the biological, geological, and chemical components of Earth's environment.

GeneLab

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GeneLab is an interactive, open-access resource where scientists can upload, download, store, search, share, transfer, and analyze omics data from spaceflight and corresponding analogue experiments. Users can explore GeneLab datasets in the Data Repository, analyze data using the Analysis Platform, and create collaborative projects using the Collaborative Workspace. GeneLab promises to facilitate and improve information sharing, foster innovation, and increase the pace of scientific discovery from extremely rare and valuable space biology experiments. Discoveries made using GeneLab have begun and will continue to deepen our understanding of biology, advance the field of genomics, and help to discover cures for diseases, create better diagnostic tools, and ultimately allow astronauts to better withstand the rigors of long-duration spaceflight. GeneLab helps scientists understand how the fundamental building blocks of life itself – DNA, RNA, proteins, and metabolites – change from exposure to microgravity, radiation, and other aspects of the space environment. GeneLab does so by providing fully coordinated epigenomics, genomics, transcriptomics, proteomics, and metabolomics data alongside essential metadata describing each spaceflight and space-relevant experiment. By carefully curating and implementing best practices for data standards, users can combine individual GeneLab datasets to gain new, comprehensive insights about the effects of spaceflight on biology. In this way, GeneLab extends the scientific knowledge gained from each biological experiment conducted in space, allowing scientists from around the world to make novel discoveries and develop new hypotheses from these priceless data.

Population Health Data Archive

PHDA

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The National Population Health Data Center (NPHDC) is one of the 20 national science data center approved by the Ministry of Science and Technology and the Ministry of Finance. The Population Health Data Archive (PHDA) is developed by NPHDC relying on the Institute of Medical Information, Chinese Academy of Medical Sciences. PHDA mainly receives scientific data from science and technology projects supported by the national budget, and also collects data from other multiple sources such as medical and health institutions, research institutions and social individuals, which is oriented to the national big data strategy and the healthy China strategy. The data resources cover basic medicine, clinical medicine, public health, traditional Chinese medicine and pharmacy, pharmacy, population and reproduction. PHDA supports data collection, archiving, processing, storage, curation, verification, certification and release in the field of population health. Provide multiple types of data sharing and application services for different hierarchy users and help them find, access, interoperate and reuse the data in a safe and controlled environment. PHDA provides important support for promoting the open sharing of scientific data of population health and domestic and foreign cooperation.

British Antarctic Survey

BAS

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British Antarctic Survey (BAS) has, for over 60 years, undertaken the majority of Britain's scientific research on and around the Antarctic continent. Atmospheric, biosphere, cryosphere, geosphere, hydrosphere, and Sun-Earth interactions metadata and data are available. Geographic information and collections are highlighted as well. Information and mapping services include a Discovery Metadata System, Data Access System, the Antarctic Digital Database (ADD), Geophysics Data Portal (BAS-GDP), ICEMAR, a fossil database, and the Antarctic Plant Database.

Forschungsdatenzentrum Ruhr am RWI

FDZ Ruhr

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As a center for scientific research and evidence-based policy advice, RWI requires an effective econometric infrastructure. The increased use of individual and firm data also requires effective regulations and tools for data protection. The research division’s objectives are to advise RWI researchers in methodical questions, to develop new econometric approaches to solve concrete research questions, and to ensure data protection.

Collaborative Research Centre 806 Database

CRC 806

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The CRC806-Database platform is the Research Data Management infrastructure of the SFB / CRC 806. The infrastructure is implemented using Open Source software, and implements Open Science, Open Access and Open Data principles. The Collaborative Research Centre (CRC; ‘Sonderforschungsbereich’ or SFB) is designed to capture the complex nature of chronology, regional structure, climatic, environmental and socio-cultural contexts of major intercontinental and transcontinental events of dispersal of Modern Man from Africa to Western Eurasia, and particularly to Europe (Cited from introductory text on: www.sfb806.de).

World Agroforestry Centre - ICRAF Dataverse

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The Centre’s vision is a rural transformation in the developing world as smallholder households strategically increase their use of trees in agricultural landscapes to improve their food security, nutrition, income, health, shelter, social cohesion, energy resources and environmental sustainability. The Centre’s mission is to generate science-based knowledge about the diverse roles that trees play in agricultural landscapes, and to use its research to advance policies and practices, and their implementation, that benefit the poor and the environment.

National Vegetation Survey Databank

NVS

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The National Vegetation Survey (NVS) Databank is a physical archive and electronic databank containing records of over 121,000 vegetation survey plots - including data from over 25,000 permanent plots in New Zealand. The data can be explored online and requested for download. The NVS Databank provides data spanning more than 60 years of indigenous and exotic plant plot records from throughout New Zealand&apos;s terrestrial ecosystems. The physical archive includes plot sheets, maps, and photographs from many years of vegetation surveys. Purpose-built software for entering, validating and summarising data is available. NVS is accorded the status of a Nationally Significant database and upkeep and maintenance is supported by Core funding for Crown Research Institutes from the NZ Ministry of Business, Innovation and Employment.

ChEBI

Chemical Entities of Biological Interest

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Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of 'small molecular entities'. The term 'molecular entity' encompasses any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity. The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms (either deliberately, as for drugs, or unintentionally', as for chemicals in the environment). The qualifier 'small' implies the exclusion of entities directly encoded by the genome, and thus as a rule nucleic acids, proteins and peptides derived from proteins by cleavage are not included.

Secondary Analysis to Generate Evidence (SAGE) Dataverse

Secondary Analysis to Generate Evidence

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SAGE is a data and research platform that enables the secondary use of data related to child and youth development, health and well-being. It currently contains research data, and at a later stage we aim to also house administrative and community service delivery data. Technical infrastructure and governance processes are in place to ensure ethical use and the privacy of participants. This dataverse provides metadata for the various data holdings available in SAGE (Secondary Analysis to Generate Evidence), a research data repository based in Edmonton Alberta and an intiative of PolicyWise for Children & Families. In general, SAGE contains data holdings too sensitive for open access. Each study lists a security level which indicates the procedure required to access the data.

Nord-Trondelag Health Study

Helseundersokelsen i Nord-Trondelag

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The Trøndelag Health Study (The HUNT Study) is one of the largest health studies ever performed. It is a unique database of questionnaire data, clinical measurements and samples from a county’s inhabitants from 1984 onwards. The HUNT Study is well-known in the county of Trøndelag, and its inhabitants have a generally positive attitude to participation and health research resulting from the study. HUNT has high participation rates, providing a good base for further health surveys in the county and an excellent research environment. Today, HUNT Research Centre has a database with information on 230,000 people. Approximately 300 national and international research projects are currently using the samples and data from HUNTs collection.

Geoscientific Data & Discovery Publishing Center

GDD

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Geoscientific Data & Discovery Publishing Center (GDD) is based on the geological scientific data generated globally, establishing policies and systems for the scientific data publishing, absorbing the concepts and methods of international open data, and joint Digital Object Unique Identifier-DOI registration agencies to provide standard data reference formats and permanent access address for data references, doing publishing through the Internet platform, which combines innovation and advance. GDD mainly includes data descriptor and entity data publishing. The data papers describe entity data and corresponding metadata information. The entity data includes common shared data such as geographic information, geologic maps, and databases, and also includes multiple data types, such as documents, archive records, data forms and other multimedia formed during geological work, various data-centric applications, database interface services, and typical data services.