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Found 90 result(s)

Stanford Microarray Database

SMD

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>>>!!!<<< SMD has been retired. After approximately fifteen years of microarray-centric research service, the Stanford Microarray Database has been retired. We apologize for any inconvenience; please read below for possible resolutions to your queries. If you are looking for any raw data that was directly linked to SMD from a manuscript, please search one of the public repositories. NCBI Gene Expression Omnibus EBI ArrayExpress All published data were previously communicated to one (or both) of the public repositories. Alternatively, data for publications between 1997 and 2004 were likely migrated to the Princeton University MicroArray Database, and are accessible there. If you are looking for a manuscript supplement (i.e. from a domain other than smd.stanford.edu), perhaps try searching the Internet Archive: Wayback Machine https://archive.org/web/ . >>>!!!<<< The Stanford Microarray Database (SMD) is a DNA microarray research database that provides a large amount of data for public use.

Global Biodiversity Information Facility

Data index of the Global Biodiversity Information Facility

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GBIF is an international organisation that is working to make the world's biodiversity data accessible everywhere in the world. GBIF and its many partners work to mobilize the data, and to improve search mechanisms, data and metadata standards, web services, and the other components of an Internet-based information infrastructure for biodiversity. GBIF makes available data that are shared by hundreds of data publishers from around the world. These data are shared according to the GBIF Data Use Agreement, which includes the provision that users of any data accessed through or retrieved via the GBIF Portal will always give credit to the original data publishers.

HepSim

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HepSim is a public repository with Monte Carlo simulations for particle-collision experiments. It contains predictions from leading-order (LO) parton shower models, next-to-leading order (NLO) and NLO with matched parton showers. It also includes Monte Carlo events after fast ("parametric") and full (Geant4) detector simulations and event reconstruction.

The Cell Map

TheCellMap

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TheCellMap.org serves as a central repository for storing and analyzing quantitative genetic interaction data produced by genome-scale Synthetic Genetic Array (SGA) experiments with the budding yeast Saccharomyces cerevisiae. In particular, TheCellMap.org allows users to easily access, visualize, explore, and functionally annotate genetic interactions, or to extract and reorganize subnetworks, using data-driven network layouts in an intuitive and interactive manner.

Regional District of North Okanagan GIS Open Data Site

RDNO GIS Open Data Site

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The data download section intent is to increase the availability of Digital Data Sets produced by the Regional District of North Okanagan to outside users. The Digital Data download options will be provided as CSV, KML, Shapefile, GeoJSON.

The Perovskite Database Project

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The Perovskite Database Project aims at making all perovskite device data, both past and future, available in a form adherent to the FAIR data principles, i.e. findable, accessible, interoperable, and reusable.

Organelle Genome Megasequencing Program

OGMP

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The Organelle Genome Megasequencing Program (OGMP) provides mitochondrial, chloroplast, and mitochondrial plasmid genome data. OGMP tools allow direct comparison of OGMP and NCBI validated records. Includes GOBASE, a taxonomically broad organelle genome database that organizes and integrates diverse data related to mitochondria and chloroplasts.

SSHADE

Solid Spectroscopy Hosting Architecture of Databases and Expertise

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SSHADE is an interoperable Solid Spectroscopy database infrastructure (www.sshade.eu) providing spectral and photometric data obtained by various spectroscopic techniques over the whole electromagnetic spectrum from gamma to radio wavelengths, through X, UV, Vis, IR, and mm ranges. The measured samples include ices, minerals, rocks, organic and carbonaceous materials... and also liquids. They are either synthesized in the laboratory, natural terrestrial analogs collected or measured in the field, or extraterrestrial samples collected on Earth or on planetary bodies: (micro-)meteorites, IDPs, lunar soils... SSHADE contains a set of specialized databases from various research groups, mostly from Europe. It is developed under the H2020 European programs* "Europlanet 2020 RI" and now "Europlanet 2024 RI" with the help of OSUG, CNRS/INSU, IPAG, and CNES. It is hosted by the OSUG data center / Université Grenoble Alpes, France. It can also be searched through the Virtual European Solar and Planetary Access (VESPA) virtual observatory.

IMEx

The International Molecular Exchange Consortium

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The IMEx consortium is an international collaboration between a group of major public interaction data providers who have agreed to share curation effort and develop and work to a single set of curation rules when capturing data from both directly deposited interaction data or from publications in peer-reviewed journals, capture full details of an interaction in a “deep” curation model, perform a complete curation of all protein-protein interactions experimentally demonstrated within a publication, make these interaction available in a single search interface on a common website, provide the data in standards compliant download formats, make all IMEx records freely accessible under the Creative Commons Attribution License

PermaSense High-Alpine Permafrost Data

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Data from high-alpine mountain permafrost research sites.

University of Hertfordshire Research Archive

UHRA

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University repository containing publication data and datasets.

Quinte West Open GIS Data Portal

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Free access to open GIS data from the city of Quinte West.

Wolfram Data Repository

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The Wolfram Data Repository is a public resource that hosts an expanding collection of computable datasets, curated and structured to be suitable for immediate use in computation, visualization, analysis and more. Building on the Wolfram Data Framework and the Wolfram Language, the Wolfram Data Repository provides a uniform system for storing data and making it immediately computable and useful. With datasets of many types and from many sources, the Wolfram Data Repository is built to be a global resource for public data and data-backed publication.

Open Forest Data

e-Puszcza

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Podlasie digital repository of natural science data

BAliBASE

Benchmark Alignment dataBASE

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A collection of high quality multiple sequence alignments for objective, comparative studies of alignment algorithms. The alignments are constructed based on 3D structure superposition and manually refined to ensure alignment of important functional residues. A number of subsets are defined covering many of the most important problems encountered when aligning real sets of proteins. It is specifically designed to serve as an evaluation resource to address all the problems encountered when aligning complete sequences. The first release provided sets of reference alignments dealing with the problems of high variability, unequal repartition and large N/C-terminal extensions and internal insertions. Version 2.0 of the database incorporates three new reference sets of alignments containing structural repeats, trans-membrane sequences and circular permutations to evaluate the accuracy of detection/prediction and alignment of these complex sequences. Within the resource, users can look at a list of all the alignments, download the whole database by ftp, get the "c" program to compare a test alignment with the BAliBASE reference (The source code for the program is freely available), or look at the results of a comparison study of several multiple alignment programs, using BAliBASE reference sets.

DataONE

Data Observation Network for Earth

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Data Observation Network for Earth (DataONE) is the foundation of new innovative environmental science through a distributed framework and sustainable cyberinfrastructure that meets the needs of science and society for open, persistent, robust, and secure access to well-described and easily discovered Earth observational data. Supported by the U.S. National Science Foundation (Grant #OCI-0830944) as one of the initial DataNets, DataONE will ensure the preservation, access, use and reuse of multi-scale, multi-discipline, and multi-national science data via three primary cyberinfrastucture elements and a broad education and outreach program.

J-Global

formerly: Japan Chemical Substance Dictionary Nikkaji

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J-GLOBAL is a service based on the concept of Linking, Expanding, and Sparking, linking science and technology information which hitherto stood alone to support the generation of ideas. By linking the information entered, we provide opportunities to make unexpected discoveries and obtain knowledge from dissimilar fields from high-quality science and technology information within and outside JST.

CIS-BP

Catalog of Inferred Sequence Binding Preferences

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The Catalog of Inferred Sequence Binding Preferences (CIS-BP) is a library of transcription factor (TF) DNA binding motifs and specificities. The data are organized in a user friendly manner for ease of searching, browsing, and downloading. CIS-BP also includes built-in web tools for scanning DNA sequences for putative TF binding sites, predicting the DNA binding motif of a given TF, and identifying a TF that might recognize a given DNA motif.

BC Oil and Gas Commission Open Data Portal

BCOGC Open Data Portal

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The BC Oil and Gas Commission (Commission) is an independent, single-window regulatory agency with responsibilities for overseeing oil and gas operations in British Columbia, including exploration, development, pipeline transportation and reclamation. Spatial and non-spatial data is collected from various sources to support oil and gas operations in the province and is used widely within the Commission. As part of its commitment to improving citizen access and involvement, enhancing transparency and understanding, the Commission is pleased to provide interactive public access to this data. Users are encouraged to explore the site and select and download the datasets that are of interest to them.

GeoNB

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GeoNB is the Province of New Brunswick’s gateway to geographic information and related value-added applications.

Élections Québec's Open Data

Données ouvertes d'Élections Québec

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Élections Québec's Open Data is available on this website is accessible to everyone, but is mostly used by media, IT developers and researchers. It is used, among other things, on websites, for applications and in studies.

B2SHARE Server Forschungszentrum Jülich

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B2SHARE allows publishing research data and belonging metadata. It supports different research communities with specific metadata schemas. This server is provided for researchers of the Research Centre Juelich and related communities.

AlphaFold

AlphaFold Protein Structure Database

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AlphaFold DB provides open access to protein structure predictions for the human proteome and 20 other key organisms to accelerate scientific research.

Terrestrial Ecosystem Research Network

TERN

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TERN provides open data, research and management tools, data infrastructure and site-based research equipment. The open access ecosystem data is provided by TERN Data Discovery Portal , see https://www.re3data.org/repository/r3d100012013

cisRED

Databases of genome-wide regulatory module and element predictions

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<<<!!!<<< This repository is no longer available. >>>!!!>>>