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Found 12 result(s)

Open Tree of Life

Tree of Life - Evolution

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The tree of life links all biodiversity through a shared evolutionary history. This project will produce the first online, comprehensive first-draft tree of all 1.8 million named species, accessible to both the public and scientific communities. Assembly of the tree will incorporate previously-published results, with strong collaborations between computational and empirical biologists to develop, test and improve methods of data synthesis. This initial tree of life will not be static; instead, we will develop tools for scientists to update and revise the tree as new data come in. Early release of the tree and tools will motivate data sharing and facilitate ongoing synthesis of knowledge.

The Monarch Initiative

Monarch Initiative

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As with most biomedical databases, the first step is to identify relevant data from the research community. The Monarch Initiative is focused primarily on phenotype-related resources. We bring in data associated with those phenotypes so that our users can begin to make connections among other biological entities of interest. We import data from a variety of data sources. With many resources integrated into a single database, we can join across the various data sources to produce integrated views. We have started with the big players including ClinVar and OMIM, but are equally interested in boutique databases. You can learn more about the sources of data that populate our system from our data sources page https://monarchinitiative.org/about/sources.

National Weather Service, National Centers for Environmental Prediction

National Centers for Environmental Prediction

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NCEP delivers national and global weather, water, climate and space weather guidance, forecasts, warnings and analyses to its Partners and External User Communities. The National Centers for Environmental Prediction (NCEP), an arm of the NOAA's National Weather Service (NWS), is comprised of nine distinct Centers, and the Office of the Director, which provide a wide variety of national and international weather guidance products to National Weather Service field offices, government agencies, emergency managers, private sector meteorologists, and meteorological organizations and societies throughout the world. NCEP is a critical national resource in national and global weather prediction. NCEP is the starting point for nearly all weather forecasts in the United States. The Centers are: Aviation Weather Center (AWC), Climate Prediction Center (CPC), Environmental Modeling Center (EMC), NCEP Central Operations (NCO), National Hurricane Center (NHC), Ocean Prediction Center (OPC), Storm Prediction Center (SPC), Space Weather Prediction Center (SWPC), Weather Prediction Center (WPC)

Citrination

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Citrination is the premier open database and analytics platform for the world's material and chemical information. Here you can find tabulated materials property data, that users have contributed or Citrine has automatically extracted from literature.

Polar Geospatial Center

PGC

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The Polar Geospatial Center provides geospatial support, mapping, and GIS/remote sensing solutions to researchers and logistics groups in the polar science community.

dbSNP

SNV

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The NCBI Short Genetic Variations database, commonly known as dbSNP, catalogs short variations in nucleotide sequences from a wide range of organisms. These variations include single nucleotide variations, short nucleotide insertions and deletions, short tandem repeats and microsatellites. Short Genetic Variations may be common, thus representing true polymorphisms, or they may be rare. Some rare human entries have additional information associated withthem, including disease associations, genotype information and allele origin, as some variations are somatic rather than germline events. ***NCBI will phase out support for non-human organism data in dbSNP and dbVar beginning on September 1, 2017***

OpenWorm

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OpenWorm aims to build the first comprehensive computational model of the Caenorhabditis elegans (C. elegans), a microscopic roundworm. With only a thousand cells, it solves basic problems such as feeding, mate-finding and predator avoidance. Despite being extremely well studied in biology, this organism still eludes a deep, principled understanding of its biology. We are using a bottom-up approach, aimed at observing the worm behaviour emerge from a simulation of data derived from scientific experiments carried out over the past decade. To do so we are incorporating the data available in the scientific community into software models. We are engineering Geppetto and Sibernetic, open-source simulation platforms, to be able to run these different models in concert. We are also forging new collaborations with universities and research institutes to collect data that fill in the gaps All the code we produce in the OpenWorm project is Open Source and available on GitHub.

GeneWeaver.org

The Ontological Discovery Environment

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GeneWeaver combines cross-species data and gene entity integration, scalable hierarchical analysis of user data with a community-built and curated data archive of gene sets and gene networks, and tools for data driven comparison of user-defined biological, behavioral and disease concepts. Gene Weaver allows users to integrate gene sets across species, tissue and experimental platform. It differs from conventional gene set over-representation analysis tools in that it allows users to evaluate intersections among all combinations of a collection of gene sets, including, but not limited to annotations to controlled vocabularies. There are numerous applications of this approach. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users.

FILER: Functional genomics repository

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Harmonized, indexed, searchable large-scale human FG data collection with extensive metadata. Provides scalable, unified way to easily access massive functional genomics (FG) and annotation data collections curated from large-scale genomic studies. Direct integration (API) with custom / high-throughput genetic and genomic analysis workflows.

Access to Archival Databases

AAD

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You will find in the Access to Archival Databases (AAD) resource online access to records in a small selection of historic databases preserved permanently in NARA. Out of the nearly 200,000 data files in its holdings, NARA has selected approximately 475 of them for public searching through AAD. We selected these data because the records identify specific persons, geographic areas, organizations, and dates. The records cover a wide variety of civilian and military functions and have many genealogical, social, political, and economic research uses. AAD provides: Access to over 85 million historic electronic records created by more than 30 agencies of the U.S. federal government and from collections of donated historical materials. Both free-text and fielded searching options. The ability to retrieve, print, and download records with the specific information that you seek. Information to help you find and understand the records.

USGS Earthquake Hazards Program Catalog

United States Geological Survey Earthquake Hazards Program Catalog

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This web site is provided by the United States Geological Survey’s (USGS) Earthquake Hazards Program as part of our effort to reduce earthquake hazard in the United States. We are part of the USGS Hazards Mission Area and are the USGS component of the congressionally established, multi-agency National Earthquake Hazards Reduction Program (NEHRP).

Data.gov

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Data.gov increases the ability of the public to easily find, download, and use datasets that are generated and held by the Federal Government. Data.gov provides descriptions of the Federal datasets (metadata), information about how to access the datasets, and tools that leverage government datasets