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Found 12 result(s)

ExPASy Bioinformatics Resource Portal

SIB Bioinformatics Resource Portal

Subject(s)
Content type(s)
Country
Swiss Institute of Bioinformatics (SIB) coordinates research and education in bioinformatics throughout Switzerland and provides bioinformatics services to the national and international research community. ExPASy gives access to numerous repositories and databases of SIB. For example: array map, MetaNetX, SWISS-MODEL and World-2DPAGE, and many others see a list here http://www.expasy.org/resources

NCBI Assembly

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<<<!!!<<< Effective May 2024, NCBI's Assembly resource will no longer be available. NCBI Assembly data can now be found on the NCBI Datasets genome pages. https://www.re3data.org/repository/r3d100014298 >>>!!!>>> A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.

Atlantic Oceanographic and Meteorological Laboratory

AOML

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Content type(s)
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The AOML Environmental Data Server (ENVIDS) provides interactive, on-line access to various oceanographic and atmospheric datasets residing at AOML. The in-house datasets include Atlantic Expendable Bathythermograph (XBT), Global Lagrangian Drifting Buoy, Hurricane Flight Level, and Atlantic Hurricane Tracks (North Atlantic Best Track and Synoptic). Other available datasets include Pacific Conductivitiy/Temperature/Depth Recorder (CTD) and World Ocean Atlas 1998.

AceView

AceView genes

Subject(s)
Content type(s)
Country
AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high quality standards the available cDNA sequences evidences the beauty and complexity of mammals’ transcriptome, and the relative simplicity of the nematode and plant transcriptomes. Genes are classified according to their inferred coding potential; many presumably non-coding genes are discovered. Genes are named by Entrez Gene names when available, else by AceView gene names, stable from release to release. Alternative features (promoters, introns and exons, polyadenylation signals) and coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression has been observed are listed in order of representation; diseases, phenotypes, pathways, functions, localization or interactions are annotated by mining selected sources, in particular PubMed, GAD and Entrez Gene, and also by performing manual annotation, especially in the worm. In this way, both the anatomy and physiology of the experimentally cDNA supported human, mouse and nematode genes are thoroughly annotated.

National Weather Service, National Centers for Environmental Prediction

National Centers for Environmental Prediction

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Content type(s)
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NCEP delivers national and global weather, water, climate and space weather guidance, forecasts, warnings and analyses to its Partners and External User Communities. The National Centers for Environmental Prediction (NCEP), an arm of the NOAA's National Weather Service (NWS), is comprised of nine distinct Centers, and the Office of the Director, which provide a wide variety of national and international weather guidance products to National Weather Service field offices, government agencies, emergency managers, private sector meteorologists, and meteorological organizations and societies throughout the world. NCEP is a critical national resource in national and global weather prediction. NCEP is the starting point for nearly all weather forecasts in the United States. The Centers are: Aviation Weather Center (AWC), Climate Prediction Center (CPC), Environmental Modeling Center (EMC), NCEP Central Operations (NCO), National Hurricane Center (NHC), Ocean Prediction Center (OPC), Storm Prediction Center (SPC), Space Weather Prediction Center (SWPC), Weather Prediction Center (WPC)

Berkeley Drosophila Genome Project

BDGP

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The goals of the Drosophila Genome Center are to finish the sequence of the euchromatic genome of Drosophila melanogaster to high quality and to generate and maintain biological annotations of this sequence. In addition to genomic sequencing, the BDGP is 1) producing gene disruptions using P element-mediated mutagenesis on a scale unprecedented in metazoans; 2) characterizing the sequence and expression of cDNAs; and 3) developing informatics tools that support the experimental process, identify features of DNA sequence, and allow us to present up-to-date information about the annotated sequence to the research community.

dbSNP

SNV

Subject(s)
Content type(s)
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The NCBI Short Genetic Variations database, commonly known as dbSNP, catalogs short variations in nucleotide sequences from a wide range of organisms. These variations include single nucleotide variations, short nucleotide insertions and deletions, short tandem repeats and microsatellites. Short Genetic Variations may be common, thus representing true polymorphisms, or they may be rare. Some rare human entries have additional information associated withthem, including disease associations, genotype information and allele origin, as some variations are somatic rather than germline events. ***NCBI will phase out support for non-human organism data in dbSNP and dbVar beginning on September 1, 2017***

Berkeley Drosophila Genome Project insitu

BDGP insitu homepage

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In early 2010 we updated the site to facilitate more rapid transfer of our data to the public database and focus our efforts on the core mission of providing expression pattern images to the research community. The original database https://www.fruitfly.org/index.html reproduced functions available on FlyBase, complicating our updates by the requirement to re-synchronize with FlyBase updates. Our expression reports on the new site still link to FlyBase gene reports, but we no longer reproduce FlyBase functions and therefore can update expression data on an ongoing basis instead of more infrequent major releases. All the functions relating to the expression patterns remain and we soon will add an option to search expression patterns by image similarity, in addition to annotation term searches. In a transitional phase we will leave both the old and the new sites up, but the newer data (post Release 2) will appear only on the new website. We welcome any feedback or requests for additional features. - The goals of the Drosophila Genome Center are to finish the sequence of the euchromatic genome of Drosophila melanogaster to high quality and to generate and maintain biological annotations of this sequence. In addition to genomic sequencing, the BDGP is 1) producing gene disruptions using P element-mediated mutagenesis on a scale unprecedented in metazoans; 2) characterizing the sequence and expression of cDNAs; and 3) developing informatics tools that support the experimental process, identify features of DNA sequence, and allow us to present up-to-date information about the annotated sequence to the research community.

REBASE

The Restriction Enzyme Database

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The Restriction Enzyme Database is a collection of information about restriction enzymes, methylases, the microorganisms from which they have been isolated, recognition sequences, cleavage sites, methylation specificity, the commercial availability of the enzymes, and references - both published and unpublished observations (dating back to 1952). REBASE is updated daily and is constantly expanding.

BioSample

BioSample at the NCBI

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The BioSample database contains descriptions of biological source materials used in experimental assays.

PSD Climate and Weather Data

NOAA, ESRL, PSD, CWD

Subject(s)
Content type(s)
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The NOAA/ESRL Physical Sciences Division (PSD) conducts weather and climate research to observe and understand Earth's physical environment, and to improve weather and climate predictions on global-to-local scales. PSD archives a wide range of data ranging from gridded climate datasets extending hundreds of years to real-time wind profiler data at a single location. The data or products derived from this data, organized by type, are available to scientists and the general public .

JPL OurOcean Portal

JET Propulsion Laboratory OurOcean Portal

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<<<!!!<<< The repository is no longer available. >>>!!!>>> The website is archived: https://web.archive.org/web/20161118010932/http:/ourocean.jpl.nasa.gov/ You can follow links to navigate further into archived content from that site.