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Found 39 result(s)

Northern California Earthquake Data Center

NCEDC

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The Northern California Earthquake Data Center (NCEDC) is a permanent archive and distribution center primarily for multiple types of digital data relating to earthquakes in central and northern California. The NCEDC is located at the Berkeley Seismological Laboratory, and has been accessible to users via the Internet since mid-1992. The NCEDC was formed as a joint project of the Berkeley Seismological Laboratory (BSL) and the U.S. Geological Survey (USGS) at Menlo Park in 1991, and current USGS funding is provided under a cooperative agreement for seismic network operations.

Microstructure Database

CAMS microstructure library

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>>>!!!<<< The repository is no longer available. >>>!!!<<< Here you will find a collection of atomic microstructures that have been built by the atomic modeling community. Feel free to download any of these and use them in your own scientific explorations.The focus of this cyberinfrastructure is to advance the field of atomic-scale modeling of materials by acting as a forum for disseminating new atomistic scale methodologies, educating non-experts and the next generation of computational materials scientists, and serving as a bridge between the atomistic and complementary (electronic structure, mesoscale) modeling communities.

CIARD Ring

CIARDRING

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The CiardRING is a global directory of web-based information services and datasets for agricultural research for development (ARD). It is the principal tool created through the CIARD initiative to allow information providers to register their services and datasets in various categories and so facilitate the discovery of sources of agriculture-related information across the world. The RING aims to provide an infrastructure to improve the accessibility of the outputs of agricultural research and of information relevant to agriculture.

NONCODE

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NONCODE is an integrated knowledge database dedicated to non-coding RNAs (excluding tRNAs and rRNAs). Now, there are 16 species in NONCODE(human, mouse, cow, rat, chicken, fruitfly, zebrafish, celegans, yeast, Arabidopsis, chimpanzee, gorilla, orangutan, rhesus macaque, opossum and platypus).The source of NONCODE includes literature and other public databases. We searched PubMed using key words ‘ncrna’, ‘noncoding’, ‘non-coding’,‘no code’, ‘non-code’, ‘lncrna’ or ‘lincrna. We retrieved the new identified lncRNAs and their annotation from the Supplementary Material or web site of these articles. Together with the newest data from Ensembl , RefSeq, lncRNAdb and GENCODE were processed through a standard pipeline for each species.

CHIANTI

An Atomic Database for Spectroscopic Diagnostics of Astrophysical Plasmas

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CHIANTI consists of a critically evaluated set of up-to-date atomic data, together with user-friendly programs written in Interactive Data Language (IDL) and Python to calculate the spectra from astrophysical plasmas.

Pombase

The scientific resource for fission yeast

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PomBase is a comprehensive database for the fission yeast Schizosaccharomyces pombe, providing structural and functional annotation, literature curation and access to large-scale data sets.

Archives of programs and data for physics

Archives for physics

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>>>!!!<<< 2018-01-18: no data nor programs can be found >>>!!!<<< These archives contain public domain programs for calculations in physics and other programs that we suppose about will help during work with computer. Physical constants and experimental or theoretical data as cross sections, rate constants, swarm parameters, etc., that are necessary for physical calculations are stored here, too. Programs are mainly dedicated to computers compatible with PC IBM. If programs do not use graphic units it is possible to use them on other computers, too. It is necessary to reprogram the graphic parts of programs in the other cases.

Codex

A comprehensive and functional compendium of Next Generation Sequencing experiments.

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CODEX is a database of NGS mouse and human experiments. Although, the main focus of CODEX is Haematopoiesis and Embryonic systems, the database includes a large variety of cell types. In addition to the publically available data, CODEX also includes a private site hosting non-published data. CODEX provides access to processed and curated NGS experiments. To use CODEX: (i) select a specialized repository (HAEMCODE or ESCODE) or choose the whole compendium (CODEX), then (ii) filter by organism and (iii) choose how to explore the database.

MCHF/MCDHF Database

Multiconfiguration Hartree-Fock and Multiconfiguration Dirac-Hartree-Focbasek Data

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The MCHF/MCDHF database contains collections of transition data from different relativistic theories by different computational methods. For a few collections the Landé gJ factor is provided.

Southern California Earthquake Data Center

SCEDC

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The Southern California Earthquake Data Center (SCEDC) operates at the Seismological Laboratory at Caltech and is the primary archive of seismological data for southern California. The 1932-to-present Caltech/USGS catalog maintained by the SCEDC is the most complete archive of seismic data for any region in the United States. Our mission is to maintain an easily accessible, well-organized, high-quality, searchable archive for research in seismology and earthquake engineering.

NITRC

Neuroimaging Informatics Tools and Resources Clearinghouse

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Neuroimaging Tools and Resources Collaboratory (NITRC) is currently a free one-stop-shop environment for science researchers that need resources such as neuroimaging analysis software, publicly available data sets, and computing power. Since its debut in 2007, NITRC has helped the neuroscience community to use software and data produced from research that, before NITRC, was routinely lost or disregarded, to make further discoveries. NITRC provides free access to data and enables pay-per-use cloud-based access to unlimited computing power, enabling worldwide scientific collaboration with minimal startup and cost. With NITRC and its components—the Resources Registry (NITRC-R), Image Repository (NITRC-IR), and Computational Environment (NITRC-CE)—a researcher can obtain pilot or proof-of-concept data to validate a hypothesis for a few dollars.

Kinsources.net

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Kinsources is an open and interactive platform to archive, share, analyze and compare kinship data used in scientific research. Kinsources is not just another genealogy website, but a peer-reviewed repository designed for comparative and collaborative research. The aim of Kinsources is to provide kinship studies with a large and solid empirical base. Kinsources combines the functionality of communal data repository with a toolbox providing researchers with advanced software for analyzing kinship data. The software Puck (Program for the Use and Computation of Kinship data) is integrated in the statistical package and the search engine of the Kinsources website. Kinsources is part of a research perspective that seeks to understand the interaction between genealogy, terminology and space in the emergence of kinship structures. Hosted by the TGIR HumaNum, the platform ensures both security and free access to the scientific data is validated by the research community.

CSISA Data Repository

Cereal Systems Initiative for South Asia (CSISA) Research Data

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In keeping with the open data policies of the U.S. Agency for International Development (USAID) and Bill & Melinda Gates Foundation, the Cereal Systems Initiative for South Asia (CSISA) has launched the CSISA Data Repository to ensure public accessibility to key data sets, including crop cut data- directly observed, crop yield estimates, on-station and on-farm research trial data and socioeconomic surveys. CSISA is a science-driven and impact-oriented regional initiative for increasing the productivity of cereal-based cropping systems in Bangladesh, India and Nepal, thus improving food security and farmers’ livelihoods. CSISA generates data that is of value and interest to a diverse audience of researchers, policymakers and the public. CSISA’s data repository is hosted on Dataverse, an open source web application developed at Harvard University to share, preserve, cite, explore and analyze research data. CSISA’s repository contains rich datasets, including on-station trial data from 2009–17 about crop and resource management practices for sustainable future cereal-based cropping systems. Collection of this data occurred during the long-term, on-station research trials conducted at the Indian Council of Agricultural Research – Research Complex for the Eastern Region in Bihar, India. The data include information on agronomic management for the sustainable intensification of cropping systems, mechanization, diversification, futuristic approaches to sustainable intensification, long-term effects of conservation agriculture practices on soil health and the pest spectrum. Additional trial data in the repository includes nutrient omission plot technique trials from Bihar, eastern Uttar Pradesh and Odisha, India, covering 2012–15, which help determine the indigenous nutrient supplying ability of the soil. This data helps develop precision nutrient management approaches that would be most effective in different types of soils. CSISA’s most popular dataset thus far includes crop cut data on maize in Odisha, India and rice in Nepal. Crop cut datasets provide ground-truthed yield estimates, as well as valuable information on relevant agronomic and socioeconomic practices affecting production practices and yield. A variety of research data on wheat systems are also available from Bangladesh and India. Additional crop cut data will also be coming online soon. Cropping system-related data and socioeconomic data are in the repository, some of which are cross-listed with a Dataverse run by the International Food Policy Research Institute. The socioeconomic datasets contain baseline information that is crucial for technology targeting, as well as to assess the adoption and performance of CSISA-supported technologies under smallholder farmers’ constrained conditions, representing the ultimate litmus test of their potential for change at scale. Other highly interesting datasets include farm composition and productive trajectory information, based on a 20-year panel dataset, and numerous wheat crop cut and maize nutrient omission trial data from across Bangladesh.

VIPERdb

Virus Particle Explorer database

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VIPERdb is a database for icosahedral virus capsid structures . The emphasis of the resource is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration. In addition, all virus capsids are placed in a single icosahedral orientation convention, facilitating comparison between different structures. The web site includes powerful search utilities , links to other relevant databases, background information on virus capsid structure, and useful database interface tools.

1000 Functional Connectomes Project

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The FCP entailed the aggregation and public release (via www.nitrc.org) of over 1200 resting state fMRI (R-fMRI) datasets collected from 33 sites around the world.

Nasa's Data Portal

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DATA.NASA.GOV is NASA's clearinghouse site for open-data provided to the public. Tens of thousands of datasets are available for you. This site is a continually growing catalog of publicly available NASA Datasets, APIs, Visualizations, and more.

BioVel

Biodiversity Virtual e-Laboratory

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<<<!!!<<< This repository is no longer available. >>>!!!>>> BioVeL is a virtual e-laboratory that supports research on biodiversity issues using large amounts of data from cross-disciplinary sources. BioVeL supports the development and use of workflows to process data. It offers the possibility to either use already made workflows or create own. BioVeL workflows are stored in MyExperiment - Biovel Group http://www.myexperiment.org/groups/643/content. They are underpinned by a range of analytical and data processing functions (generally provided as Web Services or R scripts) to support common biodiversity analysis tasks. You can find the Web Services catalogued in the BiodiversityCatalogue.

Coherent X-ray Imaging Data Bank

CXIDB

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Welcome to the Coherent X-ray Imaging Data Bank (CXIDB), a new database which offers scientists from all over the world a unique opportunity to access data from Coherent X-ray Imaging (CXI) experiments. CXIDB is dedicated to further the goal of making data from Coherent X-ray Imaging (CXI) experiments available to all, as well as archiving it.

Birdbase

A database of avian genes & genomes

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<<<!!!<<< This repository is no longer available. >>>!!!>>> The sequencing of several bird genomes and the anticipated sequencing of many more provided the impetus to develop a model organism database devoted to the taxonomic class: Aves. Birds provide model organisms important to the study of neurobiology, immunology, genetics, development, oncology, virology, cardiovascular biology, evolution and a variety of other life sciences. Many bird species are also important to agriculture, providing an enormous worldwide food source worldwide. Genomic approaches are proving invaluable to studying traits that affect meat yield, disease resistance, behavior, and bone development along with many other factors affecting productivity. In this context, BirdBase will serve both biomedical and agricultural researchers.

Water Survey of Canada

Relevés hydrologiques du Canada

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Real time and archival databases containing Canadian water information. These data include, archived hydrometric data, water level and streamflow statistics, daily and monthly mean flow, water level and sediment concentration for monitoring station across Canada. The Water Survey of Canada (WSC) is the national authority responsible for the collection, interpretation and dissemination of standardized water resource data and information in Canada. In partnership with the provinces, territories and other agencies, WSC operates over 2800 active hydrometric gauges across the country.

European Union Open Data Portal

EU Open Data Portal

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The European Union Open Data Portal is the single point of access to a growing range of data from the institutions and other bodies of the European Union (EU). Data are free for you to use and reuse for commercial or non-commercial purposes. By providing easy and free access to data, the portal aims to promote their innovative use and unleash their economic potential. It also aims to help foster the transparency and the accountability of the institutions and other bodies of the EU. The EU Open Data Portal is managed by the Publications Office of the European Union. Implementation of the EU's open data policy is the responsibility of the Directorate-General for Communications Networks, Content and Technology of the European Commission.

Harvard Medical School, Library of Integrated Network-Based Cellular Signatures Database

HMS, LINCS database

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The Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.

Clinical Proteomic Tumor Analysis Consortium Data Portal

CPTAC Data Portal

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The CPTAC Data Portal is the centralized repository for the dissemination of proteomic data collected by the Proteome Characterization Centers (PCCs) for the CPTAC program. The portal also hosts analyses of the mass spectrometry data (mapping of spectra to peptide sequences and protein identification) from the PCCs and from a CPTAC-sponsored common data analysis pipeline (CDAP).

International Argo Project

Argo.net

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Argo is an international programme using autonomous floats to collect temperature, salinity and current data in the ice-free oceans. It is teamed with the Jason ocean satellite series. Argo will soon reach its target of 3000 floats delivering data within 24 hours to researchers and operational centres worldwide. 23 countries contribute floats to Argo and many others help with float deployments. Argo has revolutionized the collection of information from inside the oceans. ARGO Project is organized in regional and national Centers with a Project Office, an Information Center (AIC) and 2 Global Data Centers (GDAC), at the United States and at France. Each DAC submits regularly all its new files to both USGODAE and Coriolis GDACs.The whole Argo data set is available in real time and delayed mode from the global data centres (GDACs). The internet addresses are: https://nrlgodae1.nrlmry.navy.mil/ and http://www.argodatamgt.org

International Neuroimaging Data-sharing Initiative

INDI

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INDI was formed as a next generation FCP effort. INDI aims to provide a model for the broader imaging community while simultaneously creating a public dataset capable of dwarfing those that most groups could obtain individually.