Repository details

Bacterial Carbohydrate Structure DataBase

Name of repository
Bacterial Carbohydrate Structure DataBase
Additional name(s)
  • Bacterial CSDB
  • BCSDB
Repository URL
http://csdb.glycoscience.ru/bacterial/index.html
Subject(s)
Description
>>>!!!Bacterial (BCSDB) and Plant&Fungal (PFCSDB) carbohydrate structure databases have been merged into a single database, CSDB!!!<<< BCSDB database is aimed at provision of structural, bibliographic, taxonomic and related information on bacterial carbohydrate structures. Two key points of this service are: covering - is above 90% in the scope of bacterial carbohydrates. This means the negative search answer remains valuable scientific information. And consistence - we manually check the data, and aim at hight quality error-free content. The main source of data is a retrospective literature analysis. About 25% of data were imported from CCSD (Carbbank, ceased in 1997, University of Georgia, Athens; structures published before 1995) with subsequent manual curation and approval. Current coverage is displayed in red on the top of the left menu. The time lag between publication of new data and their deposition ~ 1 year. The scope is "bacterial carbohydrates" and covers nearly all structures of this class published up to 2016. Bacterial means that a structure has been found in bacteria or obtained by modification of those found in bacteria. Carohydrate means a structure composed of any residues linked by glycosidic, ester, amidic, ketal, phospho- or sulpho-diester bonds, in which at least one residue is a sugar or its derivative.
Contact
  • netbox@toukach.ru
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • RRID:SCR_007560
  • RRID:nif-0000-02598
  • FAIRsharing_doi:10.25504/FAIRsharing.dkbt9j
Repository size
14.964 compounds; 8.507 organisms
Repository type(s)
  • disciplinary
Mission statement for designated community
http://toukach.ru/csdb.htm
Research data repository language(s)
  • English
Data and/or service provider
  • data provider
Institution name
Russian Academy of Sciences, N.D. Zelinsky Institute of Organic Chemistry
Additional name(s)
  • ИОХ РАН
  • Институт органической химии им. Н.Д.Зелинского Российской академии наук
Identifier(s)
  • ROR:007phxq15
Contact(s)
  • SECRETARY@ioc.ac.ru
Country
Russian Federation
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
Russian Foundation for Basic Research
Additional name(s)
  • RFBR
  • Российский фонд фундаментальных исследований
  • Рффи
Identifier(s)
  • ROR:02mh1ke95
Country
Russian Federation
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
The President of the Russian Federation Grants Council
Additional name(s)
  • RFBR
Identifier(s)
  • ROR:05gxnjj05
Country
Russian Federation
Type(s) of responsibility
  • funding
Type of institution
non-profit

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (1)

DataLicense
Public Domain

Data upload (1)

Type of data upload
open
Persistent identifier system(s)
  • none
Versioning
yes
Data citation guideline
http://csdb.glycoscience.ru/bacterial/index.html
Enhanced Publication
yes
Quality management
unknown

Metadata standards (1)

Metadata standard name
RDF Data Cube Vocabulary
Metadata standard scheme
DCC

Remarks

Remarks
Bacterial Carbohydrate Structure DataBase is covered by Thomson Reuters Data Citation Index. BCSD is one part of the Russian CSDB, the other parts are 'Plant & Fungal Carbohydrate Structure Database', and 'Glycosyltransferase Database'.
Entry date
2014-11-10
Last update
2021-12-21
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Cite this re3data.org record:

re3data.org: Bacterial Carbohydrate Structure DataBase; editing status 2021-12-21; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G04N last accessed: 2024-04-28