Repository details
Database of Genomic Variants Archive
Name of repository
Database of Genomic Variants Archive
Additional name(s)
- DGVa
- DGVarchive
Repository URL
Subject(s)
Description
<<<!!!<<< Phasing out support for the Database of Genomic Variants archive (DGVa).
The submission, archiving, and presentation of structural variation services offered by the DGVa is transitioning to the European Variation Archive (EVA) https://www.re3data.org/repository/r3d100011553. All of the data shown in the DGVa website is already searchable and browsable from the EVA Study Browser.
Submission of structural variation data to EVA is done using the VCF format. The VCF specification allows representing multiple types of structural variants such as insertions, deletions, duplications and copy-number variants. Other features such as symbolic alleles, breakends, confidence intervals etc., support more complex events, such as translocations at an imprecise position. >>>!!!>>>
Contact
- dgva-helpdesk@ebi.ac.uk
- dgva-admin@ebi.ac.uk
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
- RRID:SCR_004896
- RRID:nlx_86626
- OMICS_05335
- FAIRsharing_doi:10.25504/FAIRsharing.txkh36
Repository type(s)
- disciplinary
Research data repository language(s)
- English
Data and/or service provider
- data provider
Institution name
Additional name(s)
- EMBL
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Additional name(s)
- EMBL-EBI
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- registration
Data upload license (1)
Data upload license name
Persistent identifier system(s)
- none
Versioning
yes
Enhanced Publication
yes
Quality management
yes
Application programming interfaces (1)
API type
Remarks
Remarks
Description:
"The Database of Genomic Variants archive provides curated archiving and distribution of publicly available genomic structural variants. Direct submissions are accepted as well as published data. The DGVa is the primary supplier of data to the Database of Genomic Variants (DGV) (hosted by The Centre for Applied Genomics in Toronto, Canada)."
The DGVa works closely with the Database of Genomic Variants (DGV), hosted by The Centre for Applied Genomics in Toronto, Canada and dbVar hosted by the National Center for Biotechnology Information in Washington DC, USA. These collaborations aim to improve community resources for the storage, distribution and analysis of genomic structural variation.
Entry date
2014-05-28
Last update
2023-12-13
Cite this re3data.org record:
re3data.org: Database of Genomic Variants Archive; editing status 2023-12-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3HK7Z last accessed: 2024-04-28- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
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re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-28
