Repository details
MatrixDB
Name of repository
MatrixDB
Additional name(s)
- Extracellular Matrix interactions DataBase
Repository URL
Description
MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides.
MatrixDB takes into account the multimetric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers). MatrixDB includes interaction data extracted from the literature by manual curation in our lab, and offers access to relevant data involving extracellular proteins provided by our IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database. MatrixDB is in charge of the curation of papers published in Matrix Biology since January 2009
Contact
- sylvie.ricard-blum@univ-lyon1.fr
- http://matrixdb.univ-lyon1.fr/
Content type(s)
Persistent identifier(s) of the repository
- RRID:nif-0000-10226
- RRID:SCR_001727
- RRID:OMICS_01918
- ISSN 2426-6949
Repository size
106.543 Experimentally supported associations; 38.921 Experiments
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- data provider
- service provider
Additional name(s)
- FP7
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
End date of responsibility
2015
Institution name
Identifier(s)
- ROR:04w6kn183
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Start date of responsibility
2016
Institution name
Additional name(s)
- ifb
- Institut Francais de bioinformatique
Identifier(s)
- ROR:045f7pv37
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Start date of responsibility
2016
Institution name
Additional name(s)
- HUPO PSI
Country
Type(s) of responsibility
- sponsoring
Type of institution
non-profit
Institution name
Additional name(s)
- IBCP
Identifier(s)
- ROR:0019x5d05
Contact(s)
- matrixdb@ibcp.fr
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
End date of responsibility
2015
Institution name
Additional name(s)
- IMEx
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Institution name
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
End date of responsibility
2015
Institution name
Additional name(s)
- Institut Rhône-Alpin des Systèmes Complexes
- IXXI
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
End date of responsibility
2015
Institution name
Additional name(s)
- ICBMS
Identifier(s)
- ROR:00gj33s30
Contact(s)
- sylvie.ricard-blum@univ-lyon1.fr
Country
Type(s) of responsibility
- general
Type of institution
non-profit
End date of responsibility
2016
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- other
Data upload license (1)
Data upload license name
Persistent identifier system(s)
- none
Versioning
yes
Data citation guideline
Enhanced Publication
yes
Quality management
yes
Application programming interfaces (2)
Metadata standards (1)
Metadata standard name
Metadata standard scheme
DCC
Remarks
Remarks
MatrixDB is partner of the International Molcular Exchange Consortium (IMEx)
Entry date
2014-03-28
Last update
2022-12-16
Cite this re3data.org record:
re3data.org: MatrixDB; editing status 2022-12-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3M03H last accessed: 2024-04-19- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
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has waived all copyright and related or neighboring rights to
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-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-19
